Aeribacillus pallidus: AP3564_11545
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Entry
AP3564_11545 CDS
T04993
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
apak
Aeribacillus pallidus
Pathway
apak03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
apak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AP3564_11545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apak03400
]
AP3564_11545
Enzymes [BR:
apak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AP3564_11545
DNA repair and recombination proteins [BR:
apak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AP3564_11545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
PNKP_ligase
mRNA_cap_enzyme
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ASS90770
UniProt:
A0A223E6E4
LinkDB
All DBs
Position
complement(2390310..2392109)
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AA seq
599 aa
AA seq
DB search
MQPMMPTLSFHIPEGEKWLYEPKYDGFRTILQADEDRISLMSRNGNDLSPSFPEIKHFIE
KQIEKWRPFFPLVLDGELVMLKTAFSADVASLKRKWRRKSDETTEAYQLLVFDILLLQGE
DITKKPLSSRKELLSSVFQQLGLPLHVSPENPIPIQMIQAYHQFSQLWEKIVQHDGEGVV
CKHMLSTYENKKRTSQWLKIKNFKEALFFVTGFDSNNGYMHISVHHKGTIVQAGVFSHGM
PDNQKQALLEIIKKKGKKENHLYTIEPAICMKVRFLSIDSGSLREPSFHSFALEHDWRDC
TFLQLKMAEANVKDVAVTHIEKPLWPKHDIQKQDFLLYLLEISDYMLPFLKDRPLTVIRY
PHGLLGEAFFQKNCPDYAPEFIQTKTIDGIHYIICNDKKTLMWLGNQLAIEFHIPFNTWK
EKQPAEIVFDLDPPSKNEFHLAIYAANKLKECFDRFEIASFPKLSGNKGIQVHIPIGTNI
FSYEETRRFTSFFANYLAEQHPNEFTIERLKKNRGSRLYIDFLQHAEGKTIISPYSVRGV
ENGTVAAPLHWNEVNEQLDAESFTMDYCINRVKSGICPMKHYFSIDQHEKIKAIVEHLL
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccgatgatgccgacattatctttccatattccggaaggggagaaatggctatat
gagccaaaatatgatggttttcgcacgatattgcaagcggacgaagatcgtatttctctc
atgagccgaaatggaaacgatttatccccatcgttcccggaaattaaacattttatcgaa
aaacaaatagaaaaatggcgtcctttttttccgcttgttttggacggagagcttgttatg
ctcaaaacagctttttccgctgatgttgcctctttaaaaagaaaatggagaagaaaaagc
gatgaaacgaccgaagcatatcaacttctcgttttcgatatacttttgctgcaaggagag
gatataacaaaaaaacccctttccagccgaaaagaactactatcctccgtatttcaacaa
ctcggtttaccgttgcatgttagtccagagaatccgatcccgatccaaatgattcaagca
tatcatcagttttcccaattatgggaaaaaattgtccagcatgatggagaaggcgttgtt
tgcaaacatatgttaagcacatatgagaacaagaaaagaacatcacaatggctgaaaatc
aaaaactttaaagaagcgctcttttttgtcactggatttgattcaaacaacggctacatg
catatttctgttcatcataaaggaacaattgtgcaagccggcgttttttctcacggtatg
cctgacaaccaaaaacaagcgttgttggagattataaaaaagaaaggaaaaaaggaaaac
catctatatactatagagccggccatttgcatgaaagtacggtttctttccattgacagc
ggcagtttaagagaaccttctttccattcctttgcattggaacatgattggagagactgc
acttttttgcagctgaaaatggctgaagccaatgtcaaagatgtggctgtcacacatatt
gaaaaacctctttggccgaaacatgatatacaaaaacaagattttttgctttatttattg
gaaatttccgattatatgcttccatttttaaaagaccgccccttaacggtgatccgctat
ccgcacggtttgttgggagaagcattttttcaaaaaaattgtcctgattatgccccggaa
tttattcagacaaaaacaatcgacgggattcattatatcatttgcaatgataaaaaaacg
cttatgtggcttggcaaccagctcgcaattgaatttcatatcccctttaatacgtggaag
gaaaaacagccggcggaaattgtatttgatttagatccgccgtcgaaaaacgaatttcat
ttggctatctatgctgcaaacaagctgaaggaatgttttgatcggtttgagattgcctcc
tttccaaaactttccggaaacaaaggaattcaagttcatattccgatcggcaccaacatt
ttctcatatgaggaaacgaggcggtttacgtcttttttcgctaattatttagccgaacag
catccgaacgaatttacgattgaacgcttgaagaaaaaccggggcagccgcctttatatt
gactttttacagcatgcagagggaaaaacgatcatttcaccttattccgtcagaggagtc
gaaaatggaacggttgccgctccgcttcattggaatgaagtcaatgaacagcttgacgct
gaatcttttacaatggactactgcatcaacagggtaaaatcaggtatttgtccaatgaaa
cattatttttccatcgatcagcatgaaaaaattaaggccattgtcgagcatttattatga
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