Anaeromyxobacter paludicola: AMPC_15210
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Entry
AMPC_15210 CDS
T08525
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
apau
Anaeromyxobacter paludicola
Pathway
apau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
apau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMPC_15210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apau03400
]
AMPC_15210
Enzymes [BR:
apau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMPC_15210
DNA repair and recombination proteins [BR:
apau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMPC_15210
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BDG08408
LinkDB
All DBs
Position
complement(1664421..1665941)
Genome browser
AA seq
506 aa
AA seq
DB search
MARRLDTYRQKRDFGVTPEPAPDAPSPRGEGPPGFMVHKHHARRLHYDLRLEMDGALASW
AVPKGPSYDPSEKRLAVQTEDHPLAYGGFEGRIPDGEYGAGDSLIWDRGWYETVPPGQAS
RQRQKGHLALELHGEKLRGRWHLVRTRPAGGKEQWLLFKAKDEAADAGFDVVAARPESVT
SGRRVTRGPVAARTLKARHPAPMDLLLRVWPPMLATLARPEEAQGAWSLEVKYDGFRALA
GVSGGQVSLQSRNGLDLSARFPGVARALAGLVVGEAVLDGEVVAFDPKGVSRFQLLQGAA
GELRYAVFDLLWHEGEDLRGRPLEERQELLASLLAAPPPGILLAEAVEGSVAEALARARK
ARAEGIVAKRAGSPYRGGRSRDWLKLKVSGSQEVAVIGYTPITTGEPAIGALLVAVRQGR
GFVYAGKVGTGYTDAVRRELRARLEPDAVETPPAADAPRLRGARWVRPRLVAEVSFTEWT
ADGRLRHPSFQGLRDDKRPEECVREG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgccgcctcgacacctaccgccagaagcgcgacttcggggtcacccccgaaccg
gctcccgacgcgcccagcccgcgcggcgagggcccgcccggcttcatggtgcacaagcac
cacgcccggcggctgcactacgacctgcggctcgagatggacggcgccctcgcgagctgg
gcggtgccgaaggggccgagctacgacccctcggagaagcggctcgcggtgcagacggag
gaccacccgctcgcctacggcggcttcgaggggcgcatccccgacggcgagtacggggcg
ggcgactcgctcatctgggaccggggctggtacgagaccgtgccgcccgggcaggcctcg
aggcagcggcagaaggggcacctcgcgctcgagctgcacggcgagaagctgcgcgggcgc
tggcacctcgtccggacccggcccgcgggcgggaaggagcagtggctcctcttcaaggcc
aaggacgaggcggccgacgccggcttcgacgtggtggccgcgcggcccgagtcggtgacg
agcggccggagggtgacccgggggccggtggcggcgcgcacgctcaaggcccgccacccg
gccccgatggacctgctcctgcgcgtctggccccccatgctcgccaccctggcccggccc
gaggaggcgcagggcgcctggagcctggaggtgaagtacgacggcttccgcgccctggcc
ggcgtctccggggggcaggtgtcgctccagagccggaacgggctcgacctctcggcgcgg
ttcccgggcgtggcgcgcgcgctcgcggggctcgtggtcggggaggcggtgctcgacggg
gaggtggtggccttcgacccgaagggcgtctcgcgcttccagctcctgcagggcgccgcg
ggcgagctccggtacgccgtcttcgacctgctgtggcacgagggggaggacctccgcggc
cgaccgctcgaggagcgccaggagctgctcgcgagcctgctcgcggccccgcccccgggc
atcctgctcgccgaggcggtcgaggggagcgtggccgaggccctggcccgcgcccgcaag
gcgcgcgccgaggggatcgtcgcgaagcgggccgggtcgccgtaccgcggcgggcgctcg
cgcgactggctcaagctcaaggtctccggttcccaggaggtcgcggtgatcggctacacg
cccatcaccaccggcgagccggccatcggggcgctcctggtcgcggtccggcagggcagg
ggcttcgtctacgcggggaaggtggggaccgggtacaccgacgccgtccgccgcgagctc
cgggcgcggctcgagcccgacgccgtggagaccccgccggcggcggacgcgccgcggctc
cgcggggcccgctgggtgcggccgcggctcgtggccgaggtgtcgttcaccgagtggacc
gccgacggccggctgcgccacccctcgttccaggggctgcgcgacgacaagcggccggag
gagtgcgtccgcgaggggtga
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