Candidatus Puniceispirillum marinum: SAR116_2210
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Entry
SAR116_2210 CDS
T01207
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
apb
Candidatus Puniceispirillum marinum
Pathway
apb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAR116_2210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apb03400
]
SAR116_2210
DNA repair and recombination proteins [BR:
apb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAR116_2210
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAR116_2210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_16
DUF87
AAA
AAA_22
P-loop_SecA
SWI2_SNF2
AAA_5
Motif
Other DBs
NCBI-ProteinID:
ADE40453
UniProt:
D5BP19
LinkDB
All DBs
Position
complement(2417093..2419291)
Genome browser
AA seq
732 aa
AA seq
DB search
MDEIAKNNAAPDSTAAAKAAPDKLPEKLADNLIITRARAPADFDLQSDFKPAGDQPTAIA
ELIEGVKQGERDQVLLGVTGSGKTFTAAHVIREMKRPTLILAPNKTLAAQLYGEMKSLFP
DNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRSLLERDDVIIVASV
SCIYGIGSVETYSTMTQKITSGEDFPRQDMLRKFTELQYKRNDTNFVRGTFRVRGDSVEL
FPAHLEDRAWRISLFGDEVESIHEFDPLTGEKFASLPTITVFANSHYVTPRPTLQQACKS
IKIELKQRLAELTEANKLLEAQRIEQRTQFDVEMIEATGVCAGIENYSRYLSGRGPGEPP
PTLFEYLPENALLIVDESHVTVPQLGAMYKGDFARKSTLAEHGFRLPSCMDNRPLKFEEW
EGFRPQTIYVSATPGKYEMERTGGVFSEQIVRPTGLIDPECIVRPTGNQVDDIIAECRDA
AAKGQRVLITTLTKKMAEALSEYMFEAGLKVRYLHSDIDTLERIEIMRDLRLGVFDILIG
INLLREGLDIPECALVGILDADKEGFLRSKTSLVQTIGRAARNVEGRVILYGDRITDSMQ
YALDETNRRRAKQEAWNKAHGITPESVKKDIADVLGSVYDRADHLTPQAGGKDGALVGNN
FKTVIADLEASMKDAAANLEFEEAARLRDEIRRMEAAELGLTAPGVPSSIAQNYGFPAGT
PGAPPKKRGRRR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggatgagatcgccaaaaacaatgccgcaccagatagcaccgccgccgcaaaagccgcg
ccggataagctgccggaaaaactggcagataatctgatcatcacgcgggcgcgcgcgcct
gccgattttgatctgcaatcagatttcaagcccgccggtgaccagcccaccgcgattgcc
gaattgattgagggggtcaaacagggtgagcgcgatcaggtgttgctgggcgtgaccgga
tcgggcaagacctttaccgccgcgcatgtgatccgcgaaatgaagcggccaaccttgatc
ctcgcgccgaataaaacgctagccgcccagctttatggcgagatgaagtcgctattcccc
gataatgcggtcgaatatttcgtgtcctattacgattattaccagcccgaagcctatgtg
ccgcgaagcgatacctatatcgaaaaggaatcatcgatcaatgaacagattgaccgtatg
cggcattcggcaacgcgatcattgctggaacgcgatgatgtgattatcgtggcgtcggta
tcgtgcatctatggtatcgggtcggtcgagacctattcgacgatgacgcagaagatcacc
agcggcgaagatttcccgcggcaggatatgctgcgcaaatttaccgaactgcaatataag
cgcaatgatacgaatttcgtgcgcggcacctttcgcgtgcgcggagattcggtagagctg
tttccggcccaccttgaagatcgggcatggcggatttcactgtttggtgacgaggttgaa
tcgatccatgaatttgacccgctgaccggcgaaaaatttgccagcctgccgacaatcacg
gtgtttgccaattcgcattatgtgacgccgcgcccgacattgcagcaagcgtgtaaatcg
atcaagatcgagctgaaacaacggctggccgaattgaccgaagccaataaattgctggaa
gcgcaacggatcgaacagcgcacgcaattcgatgtcgagatgatcgaggccaccggcgtc
tgtgcggggatcgagaattattcgcgttacctgtccgggcgggggccaggcgaaccgccg
ccgactttatttgaatatctgcccgaaaatgccttgctgattgtcgatgaaagccatgtc
accgtaccgcagctgggggcgatgtataagggcgactttgcgcgcaaatcaacgctggcc
gaacatggttttcgactgccatcctgtatggataaccggcctttgaaattcgaggaatgg
gaaggattccggccgcaaacaatctatgtatcggcaacgcccggaaaatatgaaatggaa
cgcaccggcggggtgttttccgaacagattgtgcgccccaccggattgatcgatccggaa
tgtattgtgcggccaaccggcaatcaggttgatgatattatcgccgaatgccgcgatgcc
gccgccaaaggccagcgcgtgctgatcaccaccctgaccaagaaaatggccgaagcctta
agcgaatatatgttcgaagccggattgaaagtgcgctatctgcattcggatatcgacacg
ctggaacggatcgagattatgcgtgatttgcggctgggggtgtttgatattctgatcggg
atcaatctgctgcgtgaggggctggatattcccgaatgcgcgctggtcgggattctggat
gccgataaagagggctttctgcggtcaaaaacatcgctggtgcagacgattggccgcgcc
gcgcgaaatgtcgaagggcgcgtcatcctgtatggcgaccggatcaccgactcgatgcaa
tatgcgcttgatgaaaccaaccgccgccgtgccaaacaagaagcctggaacaaggcgcat
ggcatcacgcctgagtcagtgaaaaaggatattgccgatgtgctaggttcggtctatgac
cgcgccgaccatctaacgccgcaagctggtggcaaagacggcgcgctggtcggtaataac
tttaaaaccgtgatcgccgatctggaagccagcatgaaagacgccgccgccaatctggaa
tttgaagaagccgcccgtctgcgtgacgaaatccgccggatggaagcggccgaactgggg
ctgacagcgccaggggtgccaagctcaatcgctcagaattatggattccccgcgggcaca
ccgggcgcaccacctaaaaaacgcgggcgccgacggtga
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