Alpha proteobacterium HIMB59: HIMB59_00008180
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Entry
HIMB59_00008180 CDS
T02249
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
apc
Alpha proteobacterium HIMB59
Pathway
apc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HIMB59_00008180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apc03400
]
HIMB59_00008180
DNA repair and recombination proteins [BR:
apc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HIMB59_00008180
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HIMB59_00008180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_19
UB2H
AAA_30
AAA_22
AAA_7
AAA_5
Motif
Other DBs
NCBI-ProteinID:
AFS49014
UniProt:
J9YZ65
LinkDB
All DBs
Position
complement(753192..755177)
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AA seq
661 aa
AA seq
DB search
MPFKLVSENQPKGDQPQAIDKLFQGLKNNKRSQVLLGVTGSGKTFTIANVIEKFNRPTLI
MAPNKTLAAQLYEELKILFPENAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRF
RHSATRSLVEREDVIIVASVSCIYGIGAVDSYSKMTLEIQKGQKLNLMAFLRELVELQYK
RNNIDFRRGMFRVTGDRVDIFPAHLEDIAWRVSFFGDEVEEIKEFDPLTGEFLQDFGEVK
IFANSHYITPKPRLETAIQEIKKDLKSRLEELTTDNKLLEHQRLKERTNFDLEMIQATGT
CSGIENYSRYLSGRTPGEAPPTLYEFIPENSLLIIDESHVTVPQISGMYKGDRSRKQTLS
DYGFRLPSCLDNRPLKFEEWDMMRPPTIFLSATPGPWELGEVNNEYIEQIIRPTGLLDPN
CEIRTTVNQVEDLVGEIQKTLSQNNRVLITTLTKRNAEDLTNYLKEQNFKAEYMHSDVDT
IDRIKLIRSLRMGEIDIIIGINLLREGLDIPECGLVAILDADKEGYLRSKTSLVQTIGRA
ARNVDGKVILYADIKTKSIEAALEETNYRKSKQLEYNKVHNITPQSVKRNIGEIIESIYE
KDSYTVSLSKDEDLSPSKFEKHIQKLEKKMLTAAENLDFEKAAMFRDEIRKIKKDQMGIR
Q
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgccttttaaattagtcagtgaaaatcaacccaagggagatcaacctcaggcaatagat
aaactttttcaaggattgaaaaataataaaagaagtcaggtactactgggggttactggt
tcaggcaaaacatttactattgctaatgtaattgaaaaatttaatcgtcctactcttata
atggcaccaaataaaacattggctgcccaactttatgaagaattaaaaattctatttcca
gagaatgctgttgaatattttgtgagctactacgattactatcaaccagaggcctatgta
ccccgctcagatacttttattgaaaaagagtcttcaattaatgagcaaatcgatcgtttt
cgacactctgctacccgatctttggtagaaagagaagatgtaataattgtagctagtgtc
tcgtgtatttatggtattggtgctgtcgactcttattcaaaaatgactcttgagattcaa
aaaggtcagaaattaaatttaatggcttttctacgtgagttagtagagttgcaatataaa
agaaataatattgattttagaagaggaatgtttcgggtaactggtgaccgagttgatatt
tttcctgcacacttagaagatattgcgtggagggtcagtttttttggagatgaagttgaa
gaaattaaagaatttgacccattaactggcgagtttcttcaggattttggagaagtaaaa
atatttgcaaatagtcattatattacaccaaaaccaagattagagactgctattcaagaa
ataaaaaaagatcttaaatctcgtttagaagaattaacgactgataataaacttttagag
catcaacgtcttaaagagagaacaaacttcgatttagaaatgatacaagctacgggaact
tgctcaggtatagaaaactactcaagatatttaagtggcaggactccaggagaggcgcct
ccaactttatatgaatttattcccgaaaattcattacttataattgatgagtctcatgta
acggtccctcaaattagcgggatgtataaaggagatcgttcgagaaaacagacgctttct
gattatggatttagattaccatcatgtcttgataatagacctttgaaatttgaagagtgg
gatatgatgagacctcctacaatttttttatctgccacgcctggtccttgggaacttgga
gaagtaaacaatgaatatatagagcaaatcattcgacccactggactccttgatccaaat
tgtgaaattagaactaccgtcaatcaagttgaagatcttgtaggggaaattcaaaaaaca
ttatctcaaaataatcgagtacttattaccactctcacaaaaagaaatgctgaagatcta
actaattatctaaaagaacaaaattttaaagctgaatatatgcactctgatgtagataca
attgatcgtataaagctcattcgctctcttcgaatgggagagatagatattattattggg
atcaatttattaagagaaggattagatattcctgagtgcggtctagtcgcaattcttgat
gcagataaagagggatacctacgatctaaaactagtctcgttcaaactattggcagagcg
gcaagaaatgtagatggtaaagtaattttatatgcagatattaaaacaaaaagtattgag
gcagctttggaggagacaaactatcgaaagtcaaagcaacttgaatataacaaagttcat
aatattaccccacaatctgtcaaaagaaatattggcgaaataattgagagtatatatgaa
aaagatagttatactgtcagtttatctaaagatgaggatttgagtccaagtaaatttgaa
aaacacattcaaaaactagaaaaaaagatgctaacagcagcagaaaatttggattttgag
aaggcagctatgtttcgagacgaaattagaaaaattaaaaaggatcaaatgggaattagg
caatga
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