Alteromonas pelagimontana: CA267_001205
Help
Entry
CA267_001205 CDS
T06582
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apel
Alteromonas pelagimontana
Pathway
apel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CA267_001205 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apel03400
]
CA267_001205 (mfd)
Enzymes [BR:
apel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CA267_001205 (mfd)
DNA repair and recombination proteins [BR:
apel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CA267_001205 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QJR79508
UniProt:
A0A6M4M9N2
LinkDB
All DBs
Position
266576..270073
Genome browser
AA seq
1165 aa
AA seq
DB search
MTATITSLPLPKPKKISSSQDHQQWGQLQGSSQALAISQAYHQHKGPIILVTADTPSALK
LQRELSFFMDGDSAPTTLFPDWETLPYDMFSPHQDIVSQRMETLYRLTNQKEGIFIVPIN
TLMQRLAPVDYLNKYLLMLNQGQSLDRDQFRRNLEKAGYLHVNQVMSHSEFSVRGSIIDL
FPMGSTQPFRIDLFDDEIDTIRLFDPETQRSSDKVKEIRLLPAREFPTDKEGISLFRQQF
LDKFDANKAQESVFSQVSKGTMPSGVEYYLPLFFEKTATLFDYLHPSSLLLLHGNLHQAS
EFFWADVTERYEQHRYNLARPLLPPEDLFIPINNLFENIKQWPRVSLVADALDEKAGQHN
LGCPKLQDIAFNPQKKQPAEMLQKTLSDAVTRGAKVLFCAESQGRRENLLALLRKAGIRP
TLFEHFSDFLKSDENVGIAVGLVEHSFTWQHAERELHIITETELLGHKVSQRRLRDKRAA
TDENAIIRNLAELTTGQPVVHLDHGIGRYLGLQTLDAGGVMTEYLCIEYAKQAKLYVPVA
SLHLISRYTGGDADHAPVNALGSDAWSKAKQKAAEKVRDVAAELLNVYAKRAAKPGFAYN
INWEDYQAFADSFPFEETPDQLQAINAVIQDMGSPNAMDRLVCGDVGFGKTEVAMRAAFL
AANHGKQVAILVPTTLLAQQHYENFKDRFANWPFNIQVMSRFVSSKDTKTATAGLKSGLV
DIVVGTHKLLSDDVKFHDLGLVIIDEEHRFGVRQKDKFKSMRADVDILTLTATPIPRTLN
MALSGMRDLSIIATAPARRLSIKTFVQQRNSAIIREAIMREILRGGQIYFLHNEVETIEK
TAQEITEIVPEARVAVGHGQMRERDLESVMSDFYHQRYNVLVCTTIIETGIDVPTANTII
MDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTRDAAKRLDAIAALEDLGAGFA
LATHDLEIRGAGELLGADQSGQIASIGFSLYMDMLDQAVTALKEGKEPSLDEAMASQTEV
ELRIPALLPEDYIADVNTRLSLYKHLAGCKTKADIDDFQIECIDRFGLLPVQAKNLVQVA
QLKLAAKALGILKIDLSAQGGTVEFKEHTSVDPGYIIQLVQTKPQTFKFEGSQKLRIVKY
TETAKERLDLVENILADFAKESRQS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgacagctaccatcacttccttgccgcttcctaaacccaaaaaaatcagctcgtctcag
gatcaccagcaatgggggcaattacaaggcagcagccaagcgctcgccatcagtcaggcg
tatcatcagcataaagggccgataattttagttaccgccgatactccctcggcactaaaa
ctccagcgtgaacttagcttttttatggatggcgactctgcccccactacgctgttcccc
gattgggagacgttaccttatgatatgttttcgccgcatcaggatattgtgtctcagcgg
atggaaacgctttatcggttgaccaatcaaaaagaaggcatttttattgtccctattaat
acgctgatgcagcgattagctccggtcgattatcttaataaatatctgctgatgctaaat
caggggcagtcactggatcgcgaccagtttcgccgtaatttggaaaaagccggttatctt
catgttaatcaggtaatgagccacagtgaattttccgttcgcggctcgatcattgacctg
tttcccatgggcagcacgcagccttttcgtattgatctgtttgatgatgaaatcgatacc
attcgactgtttgatcccgagactcaacgctcctctgataaagtaaaagagattcgctta
cttcccgcgcgggaatttcctaccgataaagaaggcatttccctgtttaggcagcaattt
ttggataaatttgatgccaataaagcgcaggaatcggtattttcgcaggtgagcaaaggt
accatgccaagtggtgtggaatattatctaccgctgtttttcgaaaaaacggctacatta
tttgattacctgcacccgagttccttgctgttattgcacggaaacttgcatcaggcgagt
gaatttttctgggcagatgtcactgaacggtacgaacagcacaggtataatctggctcgc
cccctgctccctcccgaagacttatttattcctattaacaacctgtttgagaatattaag
cagtggccacgggtttccttagtagcagatgcgcttgatgaaaaagcgggccagcacaat
ctgggctgcccaaaattacaggatatcgcatttaatccgcaaaaaaagcaacctgccgag
atgttgcaaaaaacgctatcagacgccgtgactcgcggggcgaaggtgcttttttgtgcg
gaatcgcaaggacgcagagaaaatctgcttgctctgttacgcaaagctggcattcgcccg
accctctttgaacacttcagtgattttcttaagagcgacgagaatgtcggtattgccgtg
ggtttagtagaacacagctttacctggcaacatgctgaacgcgaactgcatattattact
gaaacggagctgcttggccataaagtcagccagcgacgtttgcgggacaagcgtgccgct
accgatgaaaacgcgattattcgcaatttggccgaactcaccactgggcaaccggttgtg
catcttgatcatggtattggtcgctatttgggcttgcaaacccttgatgccggtggcgta
atgacagaatatctgtgcattgaatacgccaaacaggcaaagctttacgtaccggtagcg
tcgctgcatcttatttcccggtataccggtggtgacgccgaccatgcgcccgtcaacgcg
ttgggctctgacgcctggagcaaagccaaacaaaaagcagcagaaaaagttcgagatgta
gcagccgagctgttgaacgtgtacgctaaacgagccgctaaacccggctttgcctacaat
atcaactgggaagattatcaagcctttgctgatagctttccttttgaagaaacgccggat
cagcttcaagcgatcaatgctgttattcaagatatgggtagcccaaatgcaatggaccga
ctggtatgtggcgacgtaggttttggcaaaaccgaagtggctatgcgcgcggcgtttctg
gctgcgaatcacggtaagcaggttgcgattctggtgccgaccactttgctggcccagcaa
cattacgaaaactttaaagaccgctttgccaactggccattcaatattcaggtaatgagc
cgcttcgttagtagtaaagacaccaaaactgcaacagcaggattaaaatccggattggtc
gatattgtagtcggaacgcataaactgctaagtgacgatgttaaatttcatgatctgggc
ttggtcattatcgatgaagaacatcgatttggtgtacgccagaaagataagtttaagtct
atgcgtgccgacgtagatatccttactttgaccgcaacgcctattcctcgaacgctgaac
atggccctctcgggtatgcgcgacctctccattattgctaccgcacctgcccgccggtta
tcaattaaaacctttgtgcagcagcgtaacagtgccatcatccgagaggcgataatgcgt
gagattttgcgcggcggtcaaatttatttcctgcacaatgaagtagaaaccattgagaaa
acggcgcaggaaattacagaaattgtcccagaggctcgcgttgccgttggccatgggcaa
atgcgcgaacgcgatttagaatcggttatgagcgatttttaccaccagcgctacaacgtg
ctggtgtgtacaactatcattgaaaccggcattgacgtacccacagccaacaccattatt
atggatcgcgcagatcatcttggtctggctcagcttcaccaactgcgcgggcgcgtggga
cgctcacatcatcaggcatacgcttatttacttactccacaccctaagcgaatgaccaga
gatgcggctaaacgcctggatgctatcgcagcgctagaagatttgggcgcaggatttgct
ttggcaacccatgatttggaaatacgaggcgcgggtgaattattaggagctgatcaatct
gggcaaatcgccagtatcggctttagcttgtatatggatatgctggatcaagcggtcact
gccttaaaagaaggtaaagagccctcactggatgaagccatggcaagccagaccgaagtc
gaactgcgaataccagcgctgttgccagaagattatatcgctgatgtgaacacgcggctt
tcgctatacaagcacctggccggatgtaaaaccaaagcagacatagatgatttccagatt
gagtgtatcgaccgattcggtttattgccggtgcaggcgaaaaacctcgttcaggtggca
cagcttaaactagcagccaaagctctgggaattttgaaaatcgacttaagcgcccagggc
gggaccgttgaatttaaggagcacacgtcagtggatccgggttatattattcagctagta
caaactaagcctcaaactttcaaattcgagggcagtcaaaaactgcgcattgtaaaatac
accgaaacggccaaagaacgtctggatttggttgaaaatattctcgccgattttgctaag
gagtcgcgccaatcatga
DBGET
integrated database retrieval system
