KEGG   Alteromonas pelagimontana: CA267_013265
Entry
CA267_013265      CDS       T06582                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
apel  Alteromonas pelagimontana
Pathway
apel03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:apel00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CA267_013265 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:apel03400]
    CA267_013265 (ligD)
Enzymes [BR:apel01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CA267_013265 (ligD)
DNA repair and recombination proteins [BR:apel03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CA267_013265 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme DNA_primase_S
Other DBs
NCBI-ProteinID: QJR81667
UniProt: A0A6M4MF99
LinkDB
Position
3019106..3021607
AA seq 833 aa
MPSDALKKYNEKRNFENTSEPQGEISAEASEALSFVVQKHAATRLHYDFRLEWNGVMWSW
AVPKGPSFNPNHKRLAVRTEDHPISYRTFEGVIPKNQYGAGPVMVWDAGTWESLEENTDD
AIKKGKIHFRLSGDKLAGEWTLARMKGAGKGKENWLLMKKSDDKSVDDEQEDFLEKTDYS
VISGLKFDDIANGITKKKSGSTASLASLTEAYSAVQLATLVDKPPKGADWLHEVKYDGYR
ILVYFCNGRVRINTRNGHNWTDKFPRLRDAFEKLEVGDFVVDGEAVVVDSNGITDFKSLQ
NALGDESAPMQAFFFDLLNWNGDDYAKQPFAERRQALEKLFEQIPSDPLFISQTISGEGK
DVIEKACELGLEGIISKRNSSPYTTSRSRYWLKTKCENRQEFIICGLIPSTAERLAVGSL
HLGYYKNDVLCYAGKVGTGFSRDEAKKLYAELSAIKRKQLPFPDSIDSDTKDTVWVEPEL
LCEVKFAAWTSTGKVRHASYQGRRADKTPEKIQKETPAPVEKSQGSAPMKAKTKTSKRST
NPRVENIPISHPDRKIFPEAEVTKEQLARFYSEMKDYIIPVVAKRPISTLRCPKGISEKC
FFQRNKGSGMSDNIHSIEIAHKDSSHDYMYINSISGLIEFVQLGVIELHPWNVRVDNSEK
PDRLIFDLDPGEDVPFEAIKLATLDIKRRLEELGLVSFLKCTGGKGLHVTVPVQRRLDWE
TAKTFCRNFAKAMVSDTPDAYTINMSKAKRGGKIFLDYLRNDYASTAVMDYSVRARAGAP
VAVPLNWNELDGLEAANQFSIDDVLERKNKKQLFEYPSVNQQLTKEVLNQYKS
NT seq 2502 nt   +upstreamnt  +downstreamnt
atgccctcagacgcgcttaaaaagtataacgaaaaacgaaattttgaaaatacttccgag
ccgcaaggggaaatatcggctgaggcatcagaggcgttatcttttgttgtgcaaaagcac
gctgccactcgccttcattatgattttcgccttgaatggaacggcgtgatgtggagctgg
gctgtgcctaaagggccaagcttcaacccaaaccacaagcgcttagcggtgcgtaccgaa
gatcatcctatttcctatcgtacatttgaaggcgtgataccgaaaaatcaatacggcgcc
ggcccggtgatggtttgggacgcgggcacttgggaatcactcgaagaaaacaccgatgac
gcgataaagaaaggcaagattcattttcggctttccggcgataaactggccggcgagtgg
accctggcccggatgaaaggagccggtaaaggaaaagaaaactggcttctgatgaaaaaa
agcgacgacaaaagcgttgatgatgaacaggaagattttcttgaaaaaactgactatagc
gtaataagtggtctcaagtttgacgacatcgccaacggaataactaaaaagaaatccgga
agtactgcgagcctcgcctcgctgacagaagcgtattctgctgtgcagttggctacgcta
gtcgataaaccgcccaaaggcgccgactggcttcatgaggttaagtatgatggttatcga
attctggtttatttttgtaatggtcgcgtaagaattaacacccgcaacggccacaactgg
acagacaaattcccacgcttacgagatgcatttgaaaaactagaagtgggagatttcgtc
gttgatggggaagcggtagttgtcgatagcaatggtattactgactttaagtctttgcaa
aacgcactgggagatgaatctgcgcctatgcaggcttttttcttcgacctgcttaactgg
aatggcgatgattacgccaaacaaccgtttgcagaaagacgtcaggcgctggaaaagctt
tttgagcaaatcccgtcagatcctttgtttattagccaaaccatttcgggtgagggcaaa
gacgtaattgaaaaggcgtgcgagcttggtttagaaggtattatttctaaacgcaattcc
tccccttataccaccagccggtcaagatattggctgaagacgaaatgtgagaaccggcag
gaatttataatttgcgggctcattccttcgactgcagagcggcttgctgtgggatcactt
cacctgggatattacaagaacgatgtgctgtgctacgccggtaaagtcggcacaggattc
tccagagatgaagcgaagaagctctacgcagaattatccgctattaaaagaaagcaactt
ccttttccggattcaatagattctgacactaaagatacggtgtgggttgagcccgagcta
ctttgtgaagtgaaattcgctgcgtggacaagcacaggaaaagtacgacacgcctcctat
cagggaaggcgggcagataaaaccccggaaaaaattcaaaaagaaactcccgcgccagta
gaaaagagccaaggtagcgcgccaatgaaagcgaaaacaaaaacatcaaaaagaagtaca
aatccacgcgttgaaaacattcctatttcccatccggatcgcaaaatatttcctgaagct
gaagtcaccaaagagcagctggcccgcttctacagcgaaatgaaagactacattattcct
gtggtcgcaaaaagacccatcagcacgctgcgatgtccaaaaggcattagtgaaaaatgc
ttttttcaacgcaataaaggcagtgggatgtcggacaacattcacagcattgaaattgcc
cataaagattcatctcacgattacatgtacatcaattcaattagcggcttaattgaattc
gtgcagttgggggtgattgaactccacccctggaacgtgcgggttgataacagtgagaag
ccagacagactgatttttgatcttgacccaggtgaagatgtgccttttgaggctataaag
cttgccacccttgacataaaacgcaggttagaagagctcggattggtttcatttttaaaa
tgcactggcggtaaaggcctgcatgtgacggttcctgttcagcgaaggctcgactgggaa
acggccaaaacgttttgccgcaattttgctaaggcaatggtaagcgatacccctgacgcc
tataccattaatatgtctaaagctaaacgcggcggcaaaatcttccttgattatttacgt
aacgattacgcgtctactgcggtcatggactacagcgtacgagcacgcgccggagcgcct
gttgccgtaccccttaactggaatgaactcgacggcttggaagcggcaaatcagttttca
attgatgatgtgctggagagaaagaacaaaaagcaactatttgagtatccgtcggtaaat
caacaattaaccaaagaggttcttaaccagtataaaagctga

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