Alteromonas pelagimontana: CA267_013265
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Entry
CA267_013265 CDS
T06582
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
apel
Alteromonas pelagimontana
Pathway
apel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
apel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CA267_013265 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apel03400
]
CA267_013265 (ligD)
Enzymes [BR:
apel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CA267_013265 (ligD)
DNA repair and recombination proteins [BR:
apel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CA267_013265 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QJR81667
UniProt:
A0A6M4MF99
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All DBs
Position
3019106..3021607
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AA seq
833 aa
AA seq
DB search
MPSDALKKYNEKRNFENTSEPQGEISAEASEALSFVVQKHAATRLHYDFRLEWNGVMWSW
AVPKGPSFNPNHKRLAVRTEDHPISYRTFEGVIPKNQYGAGPVMVWDAGTWESLEENTDD
AIKKGKIHFRLSGDKLAGEWTLARMKGAGKGKENWLLMKKSDDKSVDDEQEDFLEKTDYS
VISGLKFDDIANGITKKKSGSTASLASLTEAYSAVQLATLVDKPPKGADWLHEVKYDGYR
ILVYFCNGRVRINTRNGHNWTDKFPRLRDAFEKLEVGDFVVDGEAVVVDSNGITDFKSLQ
NALGDESAPMQAFFFDLLNWNGDDYAKQPFAERRQALEKLFEQIPSDPLFISQTISGEGK
DVIEKACELGLEGIISKRNSSPYTTSRSRYWLKTKCENRQEFIICGLIPSTAERLAVGSL
HLGYYKNDVLCYAGKVGTGFSRDEAKKLYAELSAIKRKQLPFPDSIDSDTKDTVWVEPEL
LCEVKFAAWTSTGKVRHASYQGRRADKTPEKIQKETPAPVEKSQGSAPMKAKTKTSKRST
NPRVENIPISHPDRKIFPEAEVTKEQLARFYSEMKDYIIPVVAKRPISTLRCPKGISEKC
FFQRNKGSGMSDNIHSIEIAHKDSSHDYMYINSISGLIEFVQLGVIELHPWNVRVDNSEK
PDRLIFDLDPGEDVPFEAIKLATLDIKRRLEELGLVSFLKCTGGKGLHVTVPVQRRLDWE
TAKTFCRNFAKAMVSDTPDAYTINMSKAKRGGKIFLDYLRNDYASTAVMDYSVRARAGAP
VAVPLNWNELDGLEAANQFSIDDVLERKNKKQLFEYPSVNQQLTKEVLNQYKS
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgccctcagacgcgcttaaaaagtataacgaaaaacgaaattttgaaaatacttccgag
ccgcaaggggaaatatcggctgaggcatcagaggcgttatcttttgttgtgcaaaagcac
gctgccactcgccttcattatgattttcgccttgaatggaacggcgtgatgtggagctgg
gctgtgcctaaagggccaagcttcaacccaaaccacaagcgcttagcggtgcgtaccgaa
gatcatcctatttcctatcgtacatttgaaggcgtgataccgaaaaatcaatacggcgcc
ggcccggtgatggtttgggacgcgggcacttgggaatcactcgaagaaaacaccgatgac
gcgataaagaaaggcaagattcattttcggctttccggcgataaactggccggcgagtgg
accctggcccggatgaaaggagccggtaaaggaaaagaaaactggcttctgatgaaaaaa
agcgacgacaaaagcgttgatgatgaacaggaagattttcttgaaaaaactgactatagc
gtaataagtggtctcaagtttgacgacatcgccaacggaataactaaaaagaaatccgga
agtactgcgagcctcgcctcgctgacagaagcgtattctgctgtgcagttggctacgcta
gtcgataaaccgcccaaaggcgccgactggcttcatgaggttaagtatgatggttatcga
attctggtttatttttgtaatggtcgcgtaagaattaacacccgcaacggccacaactgg
acagacaaattcccacgcttacgagatgcatttgaaaaactagaagtgggagatttcgtc
gttgatggggaagcggtagttgtcgatagcaatggtattactgactttaagtctttgcaa
aacgcactgggagatgaatctgcgcctatgcaggcttttttcttcgacctgcttaactgg
aatggcgatgattacgccaaacaaccgtttgcagaaagacgtcaggcgctggaaaagctt
tttgagcaaatcccgtcagatcctttgtttattagccaaaccatttcgggtgagggcaaa
gacgtaattgaaaaggcgtgcgagcttggtttagaaggtattatttctaaacgcaattcc
tccccttataccaccagccggtcaagatattggctgaagacgaaatgtgagaaccggcag
gaatttataatttgcgggctcattccttcgactgcagagcggcttgctgtgggatcactt
cacctgggatattacaagaacgatgtgctgtgctacgccggtaaagtcggcacaggattc
tccagagatgaagcgaagaagctctacgcagaattatccgctattaaaagaaagcaactt
ccttttccggattcaatagattctgacactaaagatacggtgtgggttgagcccgagcta
ctttgtgaagtgaaattcgctgcgtggacaagcacaggaaaagtacgacacgcctcctat
cagggaaggcgggcagataaaaccccggaaaaaattcaaaaagaaactcccgcgccagta
gaaaagagccaaggtagcgcgccaatgaaagcgaaaacaaaaacatcaaaaagaagtaca
aatccacgcgttgaaaacattcctatttcccatccggatcgcaaaatatttcctgaagct
gaagtcaccaaagagcagctggcccgcttctacagcgaaatgaaagactacattattcct
gtggtcgcaaaaagacccatcagcacgctgcgatgtccaaaaggcattagtgaaaaatgc
ttttttcaacgcaataaaggcagtgggatgtcggacaacattcacagcattgaaattgcc
cataaagattcatctcacgattacatgtacatcaattcaattagcggcttaattgaattc
gtgcagttgggggtgattgaactccacccctggaacgtgcgggttgataacagtgagaag
ccagacagactgatttttgatcttgacccaggtgaagatgtgccttttgaggctataaag
cttgccacccttgacataaaacgcaggttagaagagctcggattggtttcatttttaaaa
tgcactggcggtaaaggcctgcatgtgacggttcctgttcagcgaaggctcgactgggaa
acggccaaaacgttttgccgcaattttgctaaggcaatggtaagcgatacccctgacgcc
tataccattaatatgtctaaagctaaacgcggcggcaaaatcttccttgattatttacgt
aacgattacgcgtctactgcggtcatggactacagcgtacgagcacgcgccggagcgcct
gttgccgtaccccttaactggaatgaactcgacggcttggaagcggcaaatcagttttca
attgatgatgtgctggagagaaagaacaaaaagcaactatttgagtatccgtcggtaaat
caacaattaaccaaagaggttcttaaccagtataaaagctga
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