Alteromonas pelagimontana: CA267_017060
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Entry
CA267_017060 CDS
T06582
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
apel
Alteromonas pelagimontana
Pathway
apel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CA267_017060 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apel03400
]
CA267_017060 (recB)
Enzymes [BR:
apel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CA267_017060 (recB)
DNA repair and recombination proteins [BR:
apel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CA267_017060 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJR82337
UniProt:
A0A6M4MH74
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All DBs
Position
3868474..3872070
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AA seq
1198 aa
AA seq
DB search
MAKPLDVVGMPLAGRHLIEASAGTGKTFNITRLYLRLLLEKNLSVQQILVMTFTNAATEE
IRGRIAATLREALLFWLLVGQKGIEAAPDADPVYRHLYQQYPETGRRTLEAALLELDEAS
VFTIHGFCNKVLSQLAFSGGTPMELSLATDTRMLYVEASRDWVRMIAGNAEHYPLLVQNN
WHDPETLLAQFGAAIRSGLVPNVLTKAQIEEDFATGLQQEEQTLETEFVRIREGLLNEEH
AIASTLIEGKKDAAVRQEEWSETLAWLQQAALTAPPAAIGKFINGNRYRGNEHLKTVFAP
LKEFLAHVKKTLVALESDRDKRVEAADSYALVAQAFEFIRQHVATQKRRLGIVDFDDLIR
LLAEQVSDRNNGLQAELRSLFPVALIDEFQDTDANQYQILATVYPPGSTDNVLMMIGDPK
QAIYGFRGGDIFTYLEAGRQADHRWVMNTNWRSVEKMVTAYNRLFYGNLLTEDAANVFGY
GIDYEPVNSTAGAKAAATPLNDPNPHRAALNYVLLQPNDENDAPAKTQMQHQLALWMCTE
ISRLLDEARLGDRAVEPADIAILVRSTPEAVIVQQALKRAGLGAVFLSNRVSLFASAQAQ
DLYRVLDGIWHWENKSRLAAALSSPLLGLSHQNLIDLLYHEDDKQWEAVMSQVLLLRDMW
QKRGCMAVILHLLQTQFCGLDESTERTLTNYVHLAEVVERAATTQPQPEQLLIWLHRQVS
APEQADEQVQRLESDARLIQLVTQHGSKGLEYPIVFVPFASVYRDPAKAGNQWIQQFRFY
DSEQKQLALQLGRSYRAVEKVRQEGHAEATRLLYVAVTRAAHRCYLGIAPFNDSEQSPLA
QALGVKDKQNWQQILTSLQNEPGDHTALVEVQHPFEHRARAPKTASEEALSLATFCGSVE
ENWRLYSFSALARQQAVVKHTRRESEPVAAVAPETIQAASPESAAFRFQFEKGAGAGNLL
HDLLEVVNFNSADWASSASEVISRFHLAADKHDALFNWLNEVLAMPLHLPHSSPVCLKDL
AETSILREAKFYFPVKNARWQGISQVLMAHRQSFSQEQLLSPPSLDRQSLEGMMHGFIDL
IFEHEGKFFVADYKSTYLGDRIEDYHFAALLQNNQQHLYDVQYLIYCLALHRYLQKMIPD
YDADVHFGGVFYLYLRGMHAENTRQEGVFYTPVTASLLNDLDTLFGGTAEVPETEQTS
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaccgttagacgttgtaggcatgccgcttgctggcagacacctgatcgaagcc
agtgctggtaccggtaaaaccttcaatattacgcgtttatatttgcgtttattgctggaa
aaaaacctttctgtgcagcaaatactggtgatgacatttaccaatgccgccaccgaagaa
atccgcggcagaattgcagcaactttacgcgaagctttgctgttttggctgcttgtcggg
caaaaggggattgaggctgctccagacgcagatcccgtttatcggcatctttatcaacag
tatcccgagacaggaagacgaacactcgaggctgcgctgctggaattagatgaagcctcg
gtgttcactattcatggcttttgtaacaaggtgctaagccagctggcgttttccggtggt
acaccgatggaactgtcgttggctacagatacgaggatgctttacgtagaagcgtctcgt
gactgggtgcgcatgattgccggcaacgcagaacactacccgttgttggtgcaaaataac
tggcacgatccagagacgcttttggcgcaatttggagcggcaatacgtagtggtcttgta
cccaatgttctgacgaaagcgcagattgaggaggattttgcaaccggtctgcagcaggaa
gagcaaactctggagacagagtttgtccgcattcgggaggggcttcttaacgaagaacat
gccattgcttctacgctcatcgaaggaaagaaagatgcagcagtaagacaagaggaatgg
agcgaaacgctcgcctggttacagcaagctgcccttactgcaccgccggccgctatcggc
aagtttatcaatggcaatcgctatcgcgggaatgaacacctaaaaaccgtttttgcccca
cttaaagaatttctggctcacgttaaaaagacgcttgtagcactggaaagtgaccgggat
aaacgggttgaagccgctgatagctacgccttggtggcccaggcctttgagtttattcgt
caacatgttgctacgcaaaagcgacgactggggattgttgattttgatgatctgattcgg
ttactggccgagcaggtgagcgatagaaataacggccttcaggctgaattacgctcgctt
tttcccgttgccctgattgatgaatttcaagatacagatgctaaccagtaccaaattctt
gctactgtttatcccccgggcagcaccgataatgtgttgatgatgataggcgatcccaaa
caggctatctatgggtttcgtggcggcgacatttttacttatctggaagctggacgccaa
gccgatcatcgctgggtaatgaacaccaactggcgctcagttgaaaaaatggtaaccgct
tataaccggctgttttacggcaatctattaactgaagacgcggcaaacgtatttggttat
ggtattgattatgagccggtcaatagcactgctggcgcgaaagctgctgctacgccgctg
aatgatcccaacccccatcgagcggcgttaaactacgtgctgttgcagcctaacgatgaa
aatgacgcgccagccaaaacgcagatgcagcatcagttagcgctatggatgtgtacagaa
atttcccgcttgcttgatgaggcacggctaggtgatagggcggtagagcctgcagatatt
gccattctggtgcgaagtacgcccgaagctgtaattgttcagcaagcgctaaaacgagcc
ggattaggcgcggtttttctcagtaaccgggtaagcctgtttgcttctgcgcaagcgcag
gatttataccgggtgttggacggtatctggcactgggagaataaaagccgtcttgctgct
gccttaagtagcccgctattagggttgtcgcatcagaacctgattgatttgttatatcac
gaagatgacaagcagtgggaagccgtgatgagtcaggtgctgttgttacgcgatatgtgg
cagaaaagaggctgtatggcggtaatattgcatttgctgcaaacgcagttctgtgggctg
gatgagtcaactgaacgtacgcttactaattacgtacaccttgccgaagtcgtggagcga
gcggccaccactcagccacagccagaacagttgctgatttggctgcatcgccaggttagt
gctcctgaacaggccgatgaacaggttcagcgtttggaaagcgatgcacgtttaattcag
ctggttacgcaacacggctctaaaggattagagtatcccatcgtttttgttccctttgcc
agcgtttatcgagacccagcgaaagcaggtaatcagtggatacagcaattccgtttttac
gatagtgagcaaaaacaattggcgctgcaactgggccgcagctaccgggcggtggaaaaa
gtgcgccaggaagggcacgcagaagccacgcgattactgtacgtggcggtcacccgcgca
gcccatagatgctatttaggaatagcaccatttaacgacagtgaacagtcgccgcttgct
caggcgttaggggtaaaggataaacaaaactggcagcagatacttaccagtctacaaaac
gaaccgggtgatcataccgcccttgtcgaggttcagcacccgtttgagcaccgggctcgc
gcgcctaaaacggcgtcagaagaggcgctttctcttgcaacgttttgtggttcagttgaa
gaaaactggcgactgtattctttttctgctttagctcgtcagcaggcggtagtaaaacac
acccgccgtgagtcggaacctgttgctgctgtagcgcccgaaaccatacaggcagcttct
ccggaatccgcggcctttcgttttcagtttgaaaaaggcgcgggtgcgggaaatttgcta
cacgatcttttggaagttgtgaatttcaatagcgccgactgggccagtagcgccagtgaa
gttatcagccgttttcaccttgctgccgacaaacatgatgcgcttttcaactggctgaat
gaagtactggcgatgcctttacacctgcctcattcttcgcctgtttgtttgaaggatttg
gcagagacatccatattacgagaagcgaaattttatttccccgtcaaaaacgcgcgctgg
caaggcatttcgcaggtgctgatggcgcatcgccaaagctttagccaagagcagttgcta
agcccgccttcactggaccgacaaagcctggaagggatgatgcacgggtttattgactta
attttcgaacatgaaggaaagttttttgtcgctgattataaatctacgtaccttggcgac
agaattgaagactatcactttgccgctttgctgcaaaacaaccagcagcacctttacgac
gtgcagtacctgatttattgcctggcattgcaccggtatttacagaaaatgataccggat
tatgatgccgacgttcatttcggtggcgtgttctacctctacctgcgtggtatgcatgct
gaaaatacccggcaagagggcgttttttatacgccagtaacagcatcgttattaaatgac
ctggacacgctatttggcggcactgcggaagtccctgagacggagcaaacatcatga
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