Acetobacter persici: A0U91_02645
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Entry
A0U91_02645 CDS
T04751
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aper
Acetobacter persici
Pathway
aper03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aper00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0U91_02645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aper03400
]
A0U91_02645
Enzymes [BR:
aper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0U91_02645
DNA repair and recombination proteins [BR:
aper03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A0U91_02645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
RecG_dom3_C
AAA_16
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AQT04088
UniProt:
A0A1U9LCJ0
LinkDB
All DBs
Position
complement(574339..577818)
Genome browser
AA seq
1159 aa
AA seq
DB search
MTEETSAEGRIAPIWGVPEGYDALLLARRAREHKGSVLHIARDDAATARLADMLAYVAAD
VETLRFPAWDCLPYDRVSPNPAIVAERVATLTRLLEPSGGRPRLVLTTVGAVVQRVSPRS
TFEGQSLTVKQGESLDQAFLIELLVANGYTRTDTVMEAGEFASRGGIFDLFPAGAAEPVR
LDLFGDEVENIRAFDPGTQRSTTKQDALTLRPVSEFSLDAASISRFRTGWRDVFGPAAAA
DPLYEHISDGRRYPGIEHWLPLFHEQLETLFDYLPDVSVSLDYQVEDVFRTRLEMIADHY
QARRQPAREGETPYRALPPHLLYLDSKGWEAILSRLPVVAFSPFAKPDGAAGMDVGGRPG
KMFAKIVPGAQREQVFTLLGDQVREWEQVKRRTYVTAWTKGSRERIGTLLREHGVATQSY
EDWASASKAKPGSVALLTLGLERGFVADDLAFVSEQDLLGERIGRPPRRRRRADELIAEA
GEISAGDLVVHQDYGIGRYDGLETVSVGVAPHDCLRLLYDGGEKLYLPVENIELLSRFGS
DQAGVPLDKLGGVAWQGRKAKMKQRIRDMAGELIRTAAARALKEAPVLAPAEGLWDEFCG
RFPFVETDDQSRAIADVLDDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVV
VPTTLLARQHYRTFAARFEGFPIKVAQLSRMVTGKEATAVRKGLADGSVNIVIGTHALLA
KTIQFASLDLLIIDEEQHFGVGHKEKLKALREDVHVLTLSATPLPRTLQLSLSGVREMSL
IATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQIFCVAPRIEDLDRLAERLSTIVPD
AKVVQAHGRLTPTDLERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQ
LYQLRGRVGRGKQRGYAYLTWPQTHTLSASSEKRLEVMQTLDTLGAGFTLASHDLDLRGA
GNLLGDQQSGHVREVGIELYQQMLEDAVADLRNETSRRRAEDRDWTPNIIVGLPVLIPDA
YVPDLPVRLGLYRRISGLGSDAELEAMEAELVDRFGTLPPEVKNLLDIVDLKRLCRAAGV
ERLEAGPKGMVLQFRNNSFRNPAGLVQWMGRWKDGAVRLRPDHKMAVVRELTNTQRIDLA
RRVLRDLVKLTKKVAAEAA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgacggaagagacgagcgctgagggccgtattgcgcccatctggggcgtgcctgaaggg
tatgatgcgcttttgctggccagacgggccagagaacataaaggctctgtcctgcatatt
gctcgggatgatgccgcaacggcccggctggcggatatgctggcctatgtggctgcggat
gtggaaaccctgcggttcccggcgtgggattgcctgccgtatgaccgtgtttcccccaat
ccggccattgtggcggaacgcgttgccacgctgacccgcctgctggaaccctccgggggg
cggccgcgtctggtgctgacaacggttggcgccgtggtgcagcgtgtctccccgcgttcc
acgtttgaaggccagtctctgacggtaaagcagggggaaagccttgatcaggcttttctg
atcgaactgctggttgccaacggctacacccgtaccgatacggtgatggaagccggtgaa
tttgcctcccgcggggggatttttgatctcttcccggcgggcgctgccgagccggtccgg
ctggatctgtttggtgatgaagttgaaaatatccgggcgtttgaccccggcacccagcgg
tccaccaccaaacaggatgcgctgacgctccgcccggtttcagaattttcgctggatgcc
gccagtatttcccgcttccgcacaggctggcgggatgtttttggcccggccgcggcggct
gatccgctttatgagcatatttctgacggccgccgttatccgggcattgagcactggctg
ccgctgtttcatgagcagctggaaacgctgtttgactacctgccggatgtgtctgtctcg
cttgattatcaggttgaggatgtcttcagaacacggctggagatgattgccgaccattat
caggcccgtcgtcagcccgcgcgggaaggggagacaccttaccgcgctctgccgccgcat
ctgctgtatctggattctaaaggctgggaggccattctcagccgtctgccagttgtggcc
tttagtccgtttgccaagcccgatggtgcggcgggcatggacgtgggcggccggccgggc
aagatgtttgctaaaatcgtccccggtgcccagcgtgaacaggtttttaccctgctggga
gaccaggtgcgggagtgggagcaggttaagcgcagaacctatgtcaccgcatggaccaaa
ggctcgcgggagcgcattggcacattgctgcgggagcatggtgttgccacccagagctat
gaggactgggcatctgccagcaaagcgaagcccggctccgtcgccctgctgacgcttggg
ctggaacgcggttttgtggcggatgatctggcttttgtgtccgagcaggatctgctcggg
gaacgtattggccgcccgccgcgccgcagacgccgcgcggatgaactgattgccgaagcc
ggagaaatttccgcgggcgatctggttgtgcatcaggattacgggattggccggtatgac
gggctggagacagtcagcgtcggtgttgccccgcatgactgcctgcgcctgctctatgat
ggcggggagaagctgtatctcccggtggaaaatatcgaactgctgagccgttttggctct
gatcaggccggtgtgccgctggacaagctgggcggtgtggcctggcagggccgcaaggcc
aagatgaagcagcgcatccgggacatggccggagagctgattcgcactgctgccgcccgc
gccctgaaagaagctcccgttctggctccggcggaggggctgtgggatgaattctgtggc
cgcttcccgtttgtggaaacggatgatcagtcccgcgccattgctgatgtgctggatgat
atgagttcaggccgcccgatggaccggcttgtgtgcggggacgtaggcttcgggaaaacc
gaggtagcgctccgtgccgcctttgtggccgccatgtctggcgggcaggtggccgttgtg
gtgccgactacacttctggcgcggcagcattaccggacctttgccgcacggtttgagggt
ttccccataaaggtcgcgcagttgtcccgtatggtgacggggaaggaagccaccgccgta
cgcaaggggctggcggatgggtccgtcaatatcgtcattggcacccatgcgcttctggcc
aagacgatacagtttgcctcgctggacctgctgattattgatgaagaacagcattttggt
gtgggccataaggaaaagctgaaggcgctgcgggaggacgtgcatgtgctcacgctctcc
gccacgccattgcctcgcacgttgcagctctctctttccggtgtgcgggaaatgagcctg
atagcaacccccccgaccgaccgtctggccgtgcgcacctttatcatgccgtttgatagt
gtggtcattcgtgaggccattcagcgtgagcgcttccggggcgggcagattttctgtgtg
gcaccccgcattgaggatctggaccgtctggccgagcggctgagcaccatcgtgccggat
gccaaggttgtgcaggcgcatggccgcctgacgccaacggaccttgagcgggtgatgacg
gaattctcggatggcaaatacgacattctgctctccaccaatattgtggaaagcgggctg
gatatgcctgcggtcaatacgctgattatccaccgggccgacatgtttggccttggacag
ctttatcagctccgggggcgtgtgggacgcggcaagcagcgtggctatgcctatctgaca
tggccgcagacgcatacgctctctgcctcttccgaaaagcggctggaagtgatgcagacg
ctggatacgctgggtgcaggcttcacactggcctcgcatgatctggacctgcgcggggcc
gggaacctgctgggggaccagcagtccggccatgtaagggaagtcgggatcgaactctac
cagcagatgctggaagatgcggtggctgatctccggaatgaaaccagccgcagacgggcg
gaagaccgggactggacgccgaatattattgtcggtctgccagtgctgatccccgacgcc
tatgtgccggacctgccggtgcggcttgggctgtatcgccgtatcagtggccttgggtca
gacgcagaactggaagctatggaagccgaactggtggaccgttttggtacgctgccacca
gaggtgaagaacctgctcgatattgtggacctcaagcgcctctgccgcgccgcaggtgtg
gagcggctggaagccggccccaagggcatggtgctgcaattccgcaataacagcttcagg
aacccggcggggctggtgcagtggatgggccgctggaaagatggggctgtgcgcctgcgg
ccagaccataaaatggcggtggtgcgggagctgaccaacacgcagcgtatcgaccttgcc
cgccgtgtgctgcgggatctggttaagctgacaaagaaggtcgcggcggaggcagcctga
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