Achromobacter pestifer: FOC84_05315
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Entry
FOC84_05315 CDS
T09260
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apes
Achromobacter pestifer
Pathway
apes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOC84_05315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apes03400
]
FOC84_05315 (mfd)
Enzymes [BR:
apes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOC84_05315 (mfd)
DNA repair and recombination proteins [BR:
apes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOC84_05315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
SNF2-rel_dom
UB2H
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QKH34399
UniProt:
A0A7D4HPE4
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All DBs
Position
1060904..1064386
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AA seq
1160 aa
AA seq
DB search
MPAPSLMPAPSAPATFAPPVPATAPTLSALKAGARYAQPRPPGSGDAWLLADLARQASAP
LVILTAEPVEAQRLAEEIQLFAPDLRVRQLPDWETLPYDAFSPHQDLISERLHTLHSLMT
KSVDVLTVPVTTALYRLAPPSFLAAYTFSFKQKDKLNEAALRAQLTLANYNHVTQVTAPG
EFCLRGGLIDLFPMGSVVPYRLDLFDDEIETIRSFDVDTQRSLYPVREVQLLPGREFPMD
EDARNRFRARFREVFEGDPSRALPYKDIGNGIPFAGVEYYLPLFFEETATLFDYLTQGTV
TVTVGDIDDAIQRFNQDTSSRYGFLKSDRERPVLPPSELFLDNETLYARLKDFRRLSLTA
GQPHPDFRAAPDVSVARRAEDPIAKLRALVQAGQTRVLLCADSAGRRETLVQMLNEFGVT
PDAQPDTIEAFLASEAHFGIVAAPLSTGFGLPQANLAFLTENDLYPGLATTGRRGKRDQE
RASNVEAMVRDLSELRAGDPVVHAQHGIGRYHGLVNMDMGEGGMEFLHLEYANGSTLYVP
VSQLHVIARYSGADPEAAPLHQLGSGQWDKARRKAARQVRDTAAELLALYAQRAAREGFA
FNLPLNDYQAFAEGFGFEETVDQAAAIEAVIADMTSGRPMDRLVCGDVGFGKTEVALRAA
FLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVKVVELSRFRSAKEVAAAVEGINDG
RVDIVIGTHKILSKDVQFKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRT
LGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTLREALLRELKRGGQCYFLHNEVETI
HNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSANT
IVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSG
FYLAMHDLEIRGTGEVLGDSQSGNIQEVGFSMYNEMLNEAVRALRAGEEPDLDAPFNLAC
EVNLHAPALLPSDYCADVHARLGIYKRLAHAADEDDLIHIQEELIDRFGKLPEAAQTLLA
THRLRLAAQPLGIVKIDASETQALLQFGPKTSVDPAKIIELVQRQRHIKLAGQDKLRVEI
KAAQIPARADAVRAVLRALK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctcccagtctgatgccagccccctccgcccccgccacattcgcgcctcccgtg
cccgccacggcccccaccctgtccgcgctgaaggccggcgcgcgctatgcccaaccgcgt
ccgccggggtccggcgacgcctggttgctggcggatctggcgcggcaggcttctgcgccg
ctggtcatcctgacggccgagcccgtcgaggctcagcgtctggccgaggagatccagctg
ttcgccccggacctgcgggtgcgccagctgcccgactgggaaacgctgccctacgacgcc
ttctcgccgcatcaggacctgatttcggaacgcctgcacacgctgcattcgctgatgacc
aagtcagtggacgtgctgacggtgccggtcaccaccgcgctgtaccggctggcgccgccc
tcgttcctggcggcctacaccttttccttcaagcagaaggacaagctcaacgaagccgcg
ctgcgcgcccagctgaccctggccaactacaaccacgtcacccaggtgacggcgccgggc
gagttctgcctgcgcggcggcctgatcgacctgttccccatgggttcggtggtgccctac
cgcctggacctgttcgacgacgaaatcgagaccatccgcagcttcgacgtggacacgcag
cgcagcctgtacccggtgcgcgaagtgcagctgctgcccggccgcgaattcccgatggac
gaagacgcgcgcaaccgcttccgggcgcgcttccgtgaagtcttcgaaggcgacccttcc
cgcgcgctgccctacaaggacatcggcaacggcattccgtttgccggcgtcgaatactac
ctgccgctcttcttcgaggaaacggcgacgctgttcgactacctgacgcaaggcacggtc
accgtcacggtgggcgacatcgacgacgccatccagcgcttcaaccaggacacgtccagc
cgctacggcttcctgaagagcgaccgtgaacggccggtgctgcctccgtcggaactgttc
ctggacaacgagacgctctacgcccggttgaaggacttccgccggctgtcgctcaccgcc
ggccagccgcatcccgacttccgcgcagctcccgacgtaagcgtggcccggcgcgccgag
gatcccatcgccaagctgcgcgcgctggtgcaggcaggccagacccgcgtgctgctgtgc
gccgactccgccggccggcgcgagaccctggtgcagatgctgaatgaattcggcgtcacg
ccggacgcgcagcccgacaccatcgaggctttcctggcgtcggaggcccatttcggcatc
gtcgcggcgccgctttccaccggtttcgggctgccccaggccaatctggccttcctcacc
gaaaacgacctgtaccccgggctggccaccaccggccgccgcggcaagcgcgaccaggaa
cgcgccagcaacgtcgaagccatggtgcgcgacctgtccgagctgcgcgccggcgacccc
gtcgtgcatgcgcagcacggcatcggccgctaccacggcctggtcaacatggacatgggc
gaaggcgggatggaattcctccatctcgaatacgccaacggcagcacgctgtacgtgccg
gtgtcgcagctgcatgtgatcgcccgctacagcggcgccgatccggaggccgcccccctg
catcagctgggttccggacaatgggacaaggcgcgccgcaaggccgcccgccaggtccga
gataccgccgccgagctgttggccctgtatgcccagcgcgcggcgcgcgagggtttcgcc
ttcaacctgccgctcaacgactaccaggccttcgccgaaggcttcggcttcgaggaaacg
gtcgaccaggcagccgccatcgaggccgtcatcgccgacatgacctccggccggcccatg
gaccgcctggtctgcggcgacgtgggcttcggcaagaccgaggtcgccctgcgcgccgcc
ttcctggccgtggccaacggcaagcaggtcgccctgctctgccccaccacgctgctggcc
gagcagcacgcgcagaccttctccgaccgcttcgccgattggcccgtgaaagtggtggaa
ctgtcccgtttccgctctgccaaggaagtcgccgccgccgtcgaaggcatcaacgacggc
cgcgtcgacatcgtcatcggcacccacaagatcctgtccaaggacgtgcagttcaagcgg
ctgggcctggtcatcatcgacgaggaacaccgcttcggcgtgcgccagaaggaaacgctg
aaggcgctgcgcgccgaggtcgacgtgctgacgctgacggccacgccgatcccgcgcacg
ctgggcatgtcgctggaaggcatacgcgacttctccgtcatcgccaccgcgccgcagaag
cgcctggccatcaagaccttcgtgcggcgcgaggatggcagcactctgcgcgaagcgctc
ttgcgcgaactcaagcgcggcggccagtgctatttcctgcacaacgaggtcgagaccatc
cacaaccgccgcgcccgcctggaagagctggtgcccgaggcccgcatcgccgtggcccac
ggccagatgcccgagcgcgagctggaacaggtcatgaagggcttctaccagcagcgctac
aacgtgctgttgtgcaccaccatcatcgagacgggcatcgacgtacccagcgccaacacc
atcgtgatccaccgggccgaccgcttcgggctggcccagttgcaccagctgcgcggccgg
gtcgggcgctcgcaccaccaggcctacgcctacctgctgacgcccggcgaagacgccatc
accaacaacgccaagaagcgcctggaagccatccaggccatggaagagctcggctccggc
ttctacctggccatgcacgacctggagatccggggtaccggcgaggtgctgggcgattcg
cagtccggcaatattcaggaggtgggcttctcgatgtacaacgagatgctcaacgaggcg
gtgcgcgcgctgcgcgccggcgaagagcccgacctggacgcccccttcaacctggcctgt
gaagtcaacctgcacgccccggcgctgctgccgtccgactattgcgccgacgtccacgcc
cgcctgggcatctacaagcgcctggcgcacgccgcggacgaagacgacctgatccacatc
caggaagaactgatcgaccgcttcggcaagctgccggaggccgcccagacgctgctcgcc
acgcatcgcctgcgcctggccgcccagcccctgggcatcgtcaagatcgacgccagcgaa
acccaggcgctgctgcaattcggccccaagacctcggtcgacccggccaagatcatcgaa
ctggtgcagcgccagcgccacatcaaactggcgggacaggataaattgcgggttgagatc
aaggccgcgcagatcccggcccgcgccgacgccgtgcgcgccgtgctgcgcgctctgaag
taa
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