Acetobacter pasteurianus IFO 3283-12: APA12_11060
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Entry
APA12_11060 CDS
T01814
Name
(GenBank) DNA helicase transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apg
Acetobacter pasteurianus IFO 3283-12
Pathway
apg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
APA12_11060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apg03400
]
APA12_11060
Enzymes [BR:
apg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APA12_11060
DNA repair and recombination proteins [BR:
apg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
APA12_11060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
AAA_16
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAI20527
LinkDB
All DBs
Position
1164509..1167985
Genome browser
AA seq
1158 aa
AA seq
DB search
MTAQTGAQKRIATVWGVPEGYDALLLARRARDHKGPVLHIARNDAAMARLNDMLAFVAPD
VDVLRFPAWDCLPYDRVSPNPAIVAERVSTLTRLLEPAKGRPRLVLATVNAVVQRVAPRK
TFEGQSLSIRTGESLDQGFLIELLIANGYTRTDTVMEAGEFATRGGIFDLYPAGAGEPLR
LDLFGDEVENIRAFDPGSQRSTAKRDGLTLCPVSEFSLDKESISRFRTGWRDAFGPAATS
DPLYEHISDGRRHPGIEHWLPLFHDHLETLFDYLPDVAVSLEHQAEDVLKSRLEMIEDHY
QARRQPVREGEIPYRPLPPHLLYLDEKGWDACLSRVPVVAFSPYAQPDGAGGVDVGGRPG
KMFSKIVPGAQREQVFTLLGDQVKEWAQVKRRAFVAAWTKGSRERITTLLREHGVPTQTY
ETWEQAHKAKPGPVGLLTLGLERGFVADDLAFVSEQDLLGERIGRPPRRRRRADELIAEA
SELSAGDLVVHQDYGIGRYDGLETVSVGVAPHDCLRLLYDGGQKLYLPVENIELLSRFGS
DQAGVALDKLGGTAWQNRKSQMKKRIRDMAGELIRTAAMRALKEAPELVPPEGQWDEFCA
RFPFVETDDQARAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVV
VPTTLLARQHYRTFAARFEGFPIKVAQLSRMVTGKEATAVRKGIADGSVNIVIGTHALLA
KTVQFASLELLIIDEEQHFGVSHKEKLKALREDVHVLTLSATPLPRTLQLSLSGVREMSL
IATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQIFCVAPRIEDLDRLAERLTAIVPD
ARLIQAHGRLSATELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQ
LYQLRGRVGRGKQRGYAYLTWPQTHVLSASAEKRLEVMQTLDTLGAGFTLASHDLDLRGA
GNLLGDQQSGHVREVGIELYQQMLEDAVADLRSDKNRRAAEDWDWTPNIVMGLPVLIPDE
YVTDLPVRLGLYRRISALASDAELEAMEAELIDRFGSLPPEVKNLLDIVELKRLCRQAGV
ERVEAGPKGMVLQFRNNTFRNPAGLVQWMGKWKDGTVRLRPDHKMAVVRELTNVQRIDLA
RRVLKDLAGMCEKVMEMA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgacagcacagacaggcgcacaaaagcggatagcaaccgtatggggcgtgccagaaggg
tatgatgcccttttgctggcgcgtcgtgcgcgggatcataaaggcccggtgctgcatatt
gcgcgcaatgatgccgccatggcccgcctgaatgatatgctggcctttgtagcgcctgat
gtggatgtactgcgctttcctgcatgggattgcctgccgtatgacagggtttctcccaac
cctgccattgtggccgagcgtgtttccacccttacgcgcctgcttgaacccgcaaaaggc
cgccctcggcttgtgctggctacggtgaacgccgtggtgcagcgtgtggccccgcgtaaa
acatttgaagggcaatcactttccatccgcacgggggaaagtctggatcagggctttctg
atcgagctgctgatcgccaatggctacacccgcacggatacggtgatggaagccggggag
tttgcaacccgtggcggtatttttgatctgtaccccgccggagcaggtgaacccctgcgg
cttgatctgtttggggatgaggttgaaaacatccgcgcgtttgatcccggttcccaacgc
tctacggccaagcgtgatgggctgacactttgccctgtttctgagttctcgctggataag
gaaagcatttcacgcttccgcactggctggcgtgatgcctttggccccgctgccacgtct
gatccgctgtatgagcatatttcagatgggcgcaggcatccgggtatcgaacactggttg
cccttgttccatgatcacttggaaacactgtttgattacctgcctgatgttgctgtctcg
ctcgaacatcaggctgaggatgtgctgaaatcccggttggaaatgatagaagatcactat
caggcccgccgtcagcccgtgcgggaaggggaaattccctaccgcccgctgcctccgcac
ctgctctatctggatgaaaaagggtgggatgcctgcctgtcccgcgtgcctgtggtggca
tttagcccctatgcacagcccgatggtgccggaggtgtggatgtaggtggccgccccggt
aagatgttctccaaaattgtgcccggtgcccagcgtgagcaggtgtttacgctattgggg
gatcaggtaaaggaatgggcacaggttaagcgccgcgcctttgtggctgcgtggaccaaa
ggctcgcgcgagcgcattaccacattgctgcgtgaacacggtgtacccacccagacgtat
gagacatgggaacaggcccataaagccaaacccggcccggttgggttgcttacccttggg
ttggaacgcggttttgtagcggatgatctggcgtttgtttccgaacaggatctgctgggt
gaacgtattggccgcccaccacgccgccgtcgccgtgcagatgaactgattgccgaagcc
agcgaactttcagccggtgatctggtcgtgcatcaggattacgggattggccgttatgat
ggtctggaaaccgtaagcgtaggcgtggccccacatgattgtctgcgcctgttgtatgat
ggtgggcagaaactctacctgcctgtagaaaatatcgaactgctcagccgctttgggtca
gaccaggcaggtgttgcgctggataagctgggcggcacggcatggcagaaccgtaaatcg
caaatgaaaaagcgcatccgcgatatggcgggtgagcttatcagaaccgccgccatgcgt
gccctgaaggaagcgccggagctggttccgccggaagggcagtgggatgagttctgtgct
cgcttcccatttgtggaaacggatgatcaggcgcgcgccattgccgatgtgctggaggat
atgtcttccggtcgtccaatggatcgtctggtatgtggtgatgtggggtttggcaaaacc
gaggtagccttacgcgcggcctttgtggcggccatgtctggcgggcaggtggctgttgtt
gtgcccaccacgctgttggctcggcagcattaccgcactttcgccgcacgatttgagggc
tttcctatcaaggtagcgcagctttcccgtatggtaacgggtaaggaagccacagcagtg
cgtaagggcattgcagatggtagcgtaaacattgttatcggcacgcacgcactattggcc
aaaacggttcagtttgcctcactcgaattgctgattattgatgaagaacagcattttggc
gtgtcccataaggaaaagctgaaagccctgcgcgaagatgtgcatgtgctcacactttcc
gccacaccattgccgcgcacactccagctctcgctttccggcgtgcgggaaatgagcctg
attgccaccccaccaacagatagactggcggtgcgcacctttatcatgccgtttgatagt
gtggtgataagggaagccattcagcgtgaacgcttccgtggtgggcagattttctgtgta
gctccacgtattgaggatctggacaggctggctgaacggctaaccgccattgtgcccgat
gcccggctgatacaggcgcatggtcgtctttccgccaccgagctggaacgggtgatgacc
gaattttcagacggtaaatacgatattctgctctccaccaatattgtggaaagcgggctg
gatatgcctgcggtgaatacgctgattatccatagggcagatatgtttggccttgggcag
ctttaccagctgcgtgggcgtgtggggcgtggcaagcagcgaggctacgcttatctgaca
tggccacaaacgcatgtgctttcagcttccgcagaaaagcggctggaagtaatgcaaacg
ctggatacgctgggtgctggctttacgctggcctcgcacgatctggatttgcgtggtgcg
ggtaatctgctgggcgatcagcaatccggccatgtgcgcgaagtggggatcgaactttac
cagcagatgctggaagatgccgtggccgacctccgctcagataaaaaccgccgcgccgca
gaggattgggactggacgcccaacattgttatgggcctgcccgtgttgatcccggatgag
tatgtaaccgatctgcccgtaaggcttgggctataccgccgtatcagtgcactggcatct
gatgcggaactggaagccatggaagccgaactgatagaccgctttggttctctgccgccg
gaggtcaagaaccttctggatattgtggagcttaagcgtctgtgccgtcaggccggggta
gagcgtgttgaggctggccccaagggcatggtgctgcagttccgcaataataccttccgc
aacccggccgggttggtgcagtggatggggaaatggaaggacggcacagtccgcttgcgg
ccagaccacaaaatggcagttgtgcgcgaactcaccaacgtgcagcgcatagatctggct
cggcgcgtgctgaaggatctggccggtatgtgcgaaaaagttatggaaatggcctaa
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