Acyrthosiphon pisum (pea aphid): 100162883
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Entry
100162883 CDS
T01076
Name
(RefSeq) uncharacterized protein LOC100162883 isoform X3
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
api
Acyrthosiphon pisum (pea aphid)
Pathway
api03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
api00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100162883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
api03021
]
100162883
03019 Messenger RNA biogenesis [BR:
api03019
]
100162883
Transcription machinery [BR:
api03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100162883
Messenger RNA biogenesis [BR:
api03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100162883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_helical
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
100162883
NCBI-ProteinID:
XP_008185378
APHIDBASE:
ACYPI004003
UniProt:
A0A8R2B7A3
LinkDB
All DBs
Position
A2:85934686..85957071
Genome browser
AA seq
1813 aa
AA seq
DB search
MTAKEKEVAEEYFNALADLNVNSKPLINMLTMLAEENSAYAPIIVQCIERQLHKVQADSK
LPVLYLIDSVMKNIGPPYTPLFIHNIEKLFASTFIKVDEKTRGNMYKLRSTWNDVVTPTK
LHALDVMIHSIDKNWPISAAPPNIHVNPKFLNNVNHTEAPKPVQPIHNESEEDISLREKF
IKKQKELLELQQKKLELELLQTKNQMEIQKKRSMNKINLSKNAFNASTSSSVSVSPSNEE
VYAKIQSSENSRRITENSVKMIDVSSISSESPSMPIKVIVSPSKKFQPTPLPAVQSLKNP
AQPFVSQQQNSEMVVSSQFFNVNQQIAKINPVSTQLLQTLNRDPRLRKVENAVKSSPSLA
NDVKQPILKNKDDKKLDKPKRDSSKHRESKRKERSPSCSPSKKELPRKTHKKTDRKEKNL
KDEKYHKRRDEKKNIKELDLKKKNILSNVKTDQDETVTIKGAILPKIEEKLSKDEPKNDV
NLLSPEAIEINASKDKDLFNETDINSSENINSELEKTDSLEDSDSLKRLRIYMQTMKKSP
DPSTPAPLEMKNDSDTHAVKSNQNIIIKQQNDIDLRIKVPTVKRTSDSIKTDDIEPAAKK
SKSEIIDELFGAEDVDLRTLSALPIVPTPPPPPQISETQNSEVGKSWAKYKEIKPDTFKI
PYKSPTKKMPCELNETLVENNDTMDVDMRAKPTQNNKSHILRQAEEALNAGSISFDEYKK
IMCQVIEMNEVEKLEEVNNAEDTNAKLKEHVIPKIAIPVTGNGTDLKPTLVEPVTIIEKP
VDENSPGLGSWNLVIKKPIDVSGSDSDCSSKSCSTGSEESKKINKKSDSEDRPVYKRRKT
TFKRNEKENSKTRTWRNHKSWNSRPENGSRFSQNRVEPWSRGPRPNYSHSTRSLVPPPMY
EVPRPTAPFASSSPDWTVPVIPPSDPVILDMIAHDATKTISIDGVSREIRFYGPTAITFV
SWDDPREIYFQGTPKNVIFDDLFPVLCHFNSPDREFLLDGQPHRVRLGAPTRELYLDGKF
YECFFGGSPIFTDLGGVKRSVKLEGPPPSVNIGNTKRQDLVAGRIAIIIDNSYTVPVYLD
AKPQRIDVGNTALIFRFIDGLMRAMINDQPFKVNYNGPPQAIIVRGNKHYLRFTGLPPNI
RPGYAAISQMMGVVLTEDSSTESLPPIPVPPMPPNFTGFEMTALTPNEDINQLPPQSFSS
SYSLAPSKSTTSLPLLSNVAQKLESVTSSYVPPAMSAPIIPPVLPSDMDINELFKKLVDS
GIVPKDKPKEVVQSKLKKKEKEAENLTIKPVDFSDPLSLKQKQPGLIHNLYTGIQCSSCG
IRFTAEFTIKYSSHLDWHFRQNRREKMASKTVQSRKWYYDTSDWCKYEEQEDETTRAASW
FDIQAEKGAKEDEKLEEENVPCVPAGENSELAACYLCHDQFEQFYNEKDEEWQLKNCVEK
DKRLYHPMCHDDMIKTREEKIRKRNRAIVEAKQLESQRIEIKEGEQSELKLAEDIKIKDE
KKEEIHLKDEEKLIAEKDSLIKKEIILEKEPVGIKEVFTEKEAVLDKETVTKTETIMETE
TVMETEIETIKETETETIKETETIMETETIMETETETIIETESIKLEENEEQITDENSLQ
TEPVFQESQTEENMKTNNYEDLEIPDTMEIIQVTEVLSPKLVDEPIVENINSLSSPQNTQ
EIVPEEIKPKSPSPVSTMTCSIDGNTDTEWNVPVAPAMGTIKINISQKMTPVVKPIILSE
NTSIEPQSPPDFTQTFGEIDPDQPPPPGLEMETVVAPKIQREMKPRLMLNAKKLKEYPIV
NKGKEMSGLCSIM
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atgactgccaaggaaaaagaagtagcagaagaatattttaatgccttagccgacctcaac
gtcaatagcaagcctttgataaacatgttgacaatgctggctgaagagaactcagcttat
gcgccaatcattgtacagtgtattgaaagacaactgcataaggtgcaggctgacagcaag
ttaccagtactttacttaattgactcggtcatgaaaaacattggaccgccatatacacca
cttttcattcacaacattgagaaactttttgctagcactttcattaaagttgatgaaaag
actagaggaaatatgtataaactacgttctacatggaatgatgttgtaacacctactaaa
cttcacgcccttgatgtaatgattcattcaattgacaaaaactggcctataagcgctgct
ccaccaaacattcatgttaatccaaaatttctaaataatgttaatcataccgaggcaccg
aaacctgtacaaccaatacacaatgagtctgaagaagatatatctttacgagaaaaattc
attaagaaacaaaaggaattgcttgaactacagcaaaaaaaattagaattggaattattg
caaaccaaaaatcaaatggaaattcaaaaaaaaagatcaatgaacaagataaatctatca
aaaaatgcttttaatgcgagtacatcatcttctgtgagtgtttcgccttctaatgaagaa
gtatatgcaaaaattcagtcatctgaaaattctcgaagaataactgagaattcagttaaa
atgattgatgtatcttcaatcagttcagagtcaccttcaatgccaattaaagttattgtt
tcaccttctaaaaaattccaaccaacacctttacctgcagtacaatcgttaaaaaatcct
gcacaaccatttgtatcacagcaacaaaattcagaaatggttgtttctagtcaatttttc
aatgtaaaccaacaaattgccaaaatcaacccagtcagtacacaattgttacaaactcta
aaccgcgatccacgtttaagaaaagtggaaaatgctgtaaagtcgtcaccatcacttgct
aatgatgttaaacagccaattctcaaaaataaagatgataaaaaacttgataaacccaaa
agagacagtagtaaacatcgggaatcaaaaagaaaagaaagaagtccaagttgttcacct
tctaaaaaagaactcccaagaaagacccataaaaaaactgaccgcaaagaaaaaaactta
aaagatgaaaaatatcacaaaagaagagatgaaaaaaaaaatattaaagaactggactta
aagaagaaaaatatattatccaatgtaaaaaccgatcaggatgaaacagtgactatcaaa
ggtgcaatactgccaaaaatcgaagaaaagttgtccaaagacgaacctaaaaatgatgtt
aatcttcttagtcctgaagctattgaaataaatgcttctaaagacaaagatttatttaat
gaaactgatataaacagttctgaaaacattaattctgaattagaaaaaacagattctctg
gaagattccgattctttaaaacgtcttcgtatatacatgcaaacaatgaagaaatcacct
gatccatcaactccagcaccattagaaatgaaaaatgactcagacacccatgctgtaaaa
tccaatcaaaacattattatcaaacaacaaaatgacattgacctaagaattaaagtcccg
actgtgaagaggacctccgattcaatcaaaactgatgatatagaacctgcagcaaaaaag
agcaaatctgaaatcattgatgaactctttggtgcagaagatgtggatttacgaacatta
tctgctctacctattgtacctacaccaccacctccgccacaaatatctgaaacacaaaat
tctgaggttggtaaatcttgggcaaaatataaggaaataaaaccagatacgtttaaaata
ccatacaagtctcctaccaaaaaaatgccttgtgaattgaatgaaacattagtagaaaat
aatgatacaatggacgtagacatgcgagctaaacctacacaaaacaataaaagccatatt
cttagacaagctgaagaagctttaaacgcaggaagcatatcttttgatgaatataaaaaa
attatgtgtcaggtaattgaaatgaatgaagtggaaaaattagaagaagtcaataatgca
gaagatactaatgctaaattaaaggagcacgttattccaaaaattgctatacctgttact
ggaaatggtactgatttaaaacctaccttagtagaaccggtaactattattgaaaaacct
gttgatgaaaacagtcccgggcttggctcttggaatcttgttatcaaaaaaccaattgat
gtcagcggaagtgatagcgattgttcttcaaaaagttgttctactggttcagaagagtca
aaaaaaattaacaaaaaatcagattccgaggatcgacctgtatataaaaggcgtaaaaca
acattcaaacgcaatgaaaaagaaaattctaaaactcgtacttggagaaatcataaaagt
tggaattcaagaccggaaaatggttctagattctctcaaaatagagtagaaccttggtct
agaggacctcgtccaaattattctcactcaacaagatctcttgttccaccgcctatgtat
gaagtgcctagaccaactgctccatttgcatcttcttcacctgattggacagttcctgtt
attcctccttcagatcctgtaatactggatatgattgctcatgatgctacaaaaactatc
agtattgatggtgtatcgagagaaatacgattttatggtccaacagcgattacttttgta
tcttgggacgatcctagagagatatattttcaaggaactccaaaaaacgttatatttgat
gatctatttcctgttttgtgccatttcaatagtcctgatagagaatttttattagatggt
caacctcatagagtacggttaggtgcaccaactcgagaactttatttagacggaaaattc
tatgaatgtttttttggtggttctccaatctttactgaccttggtggtgttaaaagatct
gttaaacttgaaggtcctcctccttcagtcaatataggcaacacaaagcgacaagattta
gttgctggtcgtatagcaattattattgataactcgtatactgtacctgtctatttggat
gctaaaccacagcgtattgatgtgggtaacactgcacttatttttcgttttattgatgga
ttaatgagagctatgattaatgaccaaccgttcaaagttaactataacggaccaccacaa
gcaattattgtaagaggcaataaacactacttaagattcacaggattaccaccaaatatt
agaccaggatacgctgctatttctcaaatgatgggtgtagtactaactgaagattcttct
accgaatctttaccgccaatacctgttccaccaatgccaccaaatttcaccggttttgaa
atgactgcattaacaccaaatgaagatattaaccaacttcctccacaatcattctcttct
tcatattctttagcaccaagtaaatcaacgacatcactacctctactttctaatgttgct
cagaaattagaatctgttacaagttcttatgtaccacctgcaatgtctgcacctataata
cctcctgtcttacctagtgatatggacattaatgagctatttaagaagttagtggacagt
ggaattgtacctaaggacaagccaaaagaagttgtccaatcaaaactaaaaaagaaagag
aaggaggcagaaaatttaactataaaacctgttgatttttcagatcctttatccttaaaa
caaaaacaaccaggattaattcacaacttatatacaggaattcagtgcagttcttgtggt
attcgtttcactgcagagtttaccattaagtatagtagtcatttagattggcattttaga
caaaatagacgtgaaaaaatggcaagcaaaactgttcaatctagaaaatggtattatgat
actagtgactggtgtaaatatgaagaacaagaagatgaaacgactagagctgcgagttgg
tttgatatacaagcagaaaaaggtgctaaagaagatgaaaaattagaagaagagaatgtt
ccttgtgttccagctggtgaaaatagcgaactagctgcctgttatttgtgtcatgatcag
tttgaacaattttataatgaaaaagatgaagagtggcaattgaagaattgtgttgaaaag
gataaaaggctttatcatcccatgtgccatgatgatatgattaaaactcgagaggaaaaa
attcgtaagagaaatcgagctattgtagaagctaaacaattggaaagccaaagaatagaa
atcaaagaaggagaacaatctgaattaaaattggcagaagatataaaaatcaaagatgaa
aaaaaagaagaaatacatttgaaagatgaagaaaaacttatagctgaaaaagattcatta
ataaaaaaagaaataattttagaaaaagaaccagttgggattaaagaagtatttacagaa
aaagaagcagttctagataaagaaactgttacaaaaactgaaacaattatggaaacagaa
acagttatggaaacagaaatagaaacaattaaggaaacagaaacagaaacaattaaggaa
acagaaacaattatggaaacagaaacaattatggaaacagaaacagaaacaattatagaa
accgaatcaattaaacttgaagaaaatgaagagcaaataacagatgaaaattcacttcaa
actgaaccagtttttcaagaatcacagactgaagaaaatatgaagacaaataattatgaa
gatttggaaattcctgacactatggaaataattcaagtgactgaagttttatcacctaaa
ttagttgatgaacccattgttgaaaacattaacagtttgtcatccccccaaaacactcaa
gaaattgtacctgaagaaattaaacctaaatctccatcccctgtttctacaatgacatgt
tctattgatggaaacactgatactgaatggaatgttccagttgctcccgcaatggggaca
atcaagataaacatcagtcaaaaaatgacacctgttgtaaaaccaatcattctctctgaa
aacacatccattgaaccacagtcaccaccagatttcacacagacgtttggggaaatcgat
cctgatcaaccaccaccaccaggtcttgaaatggaaactgtagtggctcctaaaatacaa
agggaaatgaaaccaagactgatgctcaatgcaaaaaaacttaaggaatatccaatagtt
aataaaggtaaagaaatgtcaggattatgttcaattatgtaa
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integrated database retrieval system
