Apibacter sp. B2966: G8C43_08740
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Entry
G8C43_08740 CDS
T06471
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apib
Apibacter sp. B2966
Pathway
apib03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G8C43_08740 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apib03400
]
G8C43_08740 (mfd)
Enzymes [BR:
apib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G8C43_08740 (mfd)
DNA repair and recombination proteins [BR:
apib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G8C43_08740 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Syntaxin-6_N
UB2H
Motif
Other DBs
NCBI-ProteinID:
QII72850
LinkDB
All DBs
Position
2041593..2044958
Genome browser
AA seq
1121 aa
AA seq
DB search
MKTNSIIHSIFPLLKKSILDSEVSIFLEENNIIKLSVLGAAGSYLNIYSSYLYNSLKKTV
LLLFSDKEEAAYALNEIEDIFGKDTVLFYPTSHLTPYQIEEVQNANVVLRTEVINSITQM
QNPKIIITYADALSEKIITKSELHSISFKIKTGEKIDADFLNETLFSFHFKRTDFVTQPG
EFSVRGGIVDVFSYSDEKPYRIGFFGNEVETIRKFNIDTQLSEEKVDEFMIVPNIDHSHR
ETMKVSFLDYLPSDTIFISKDFSLTLANIEKKFSKAEEVYATLSQSIKRSEPKELYIQSH
ELISKIVQNSFIEFSSIPYFNEFKTVRLDQTEQPSFHKQFDLLGQDLLEKEKSHYKNYIA
FQSEKQESRLQDIFSEIEKEVPFIGFHANVSKGFIDHNSKFLIYTDHQIFERYHRYNLRN
SFSKSESLTLKELTDLKVGDYVTHIDHGIGKFMGLVKIKNDDKLQETIKLVYKNNDILYV
NIHSLHKISKFSGKEGAEVTLNQLGSAAWKNLKNKAKRKVKEVAFDLIKLYADRKTKKGF
SFSPDGYLQNELEASFMYEDTPDQEKATQDVKSDMEKPIAMDRLICGDVGFGKTEIAIRA
AFKAATDGKQSAIMVPTTILALQHYKTFMSRLKDFPVRIEYLNRFKTAGQKKEIIKSLAE
GKIDIIIGTHQLIGKDVVFKDLGLLIIDEEHKFGVSVKDKLKTLKTTVDTLTLTATPIPR
TLQFSLMAARDMSVIKTPPPNRQPVQTQLIGFNEEQIRDAIIYELNREGQILFINNRIEN
LDVLAGMIKRLVPMARVAIGHGQMEGKKLEKIMIDFMEGNYDVLISTTIIESGLDVPNAN
TIFINDAQRFGLADLHQMRGRVGRSNRKAFCYLITPPLDVITSEARKRLQAIEQFSDLGS
GFNIAMKDLEIRGAGDLLGAEQSGFFAEIGFEAYQQILNEAIEELKEDEFSDLFVEENEK
KEFITDVQIDTDFELLIPDQYVNKVEERFSLYQKLSEITNEEELTNFKNELIDRFGKLPD
QTQDLLKSVKLKWISKYIGFEKLLIKNNVLLAYFPINAQSKYYQSDTFKKVLEYLQNNPS
DASLKQKNVHDNLQLYLRKDKILKIDDVLYFLERIHAFIDE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacaaattccattatacactcaatttttccgcttttaaaaaagagtattttagat
tcggaagtatccatttttttagaagaaaataatatcataaaactatctgtattaggtgcg
gcaggatcgtaccttaacatttacagcagttatttatataattctttgaaaaaaacggta
ttgttactcttttccgataaagaagaagcagcgtatgctttgaatgaaatcgaagatata
ttcgggaaagatacagttttgttttatcctacctcacatttaactccttatcagattgag
gaagtccaaaacgcaaatgtggttttacgaacggaagtgattaacagcatcacgcaaatg
caaaatcccaaaattattattacttatgctgatgctttatctgaaaaaataattactaaa
tctgaattacattcgattagttttaaaataaaaacaggtgaaaaaattgatgcagatttc
cttaatgaaacgcttttcagttttcattttaaacgaaccgattttgtaactcaacccggt
gaattttctgtaagaggagggattgtagatgttttctcttattctgatgaaaaaccctat
cgtataggtttttttggtaacgaagtggaaactatacgtaaatttaatattgacactcaa
ctttcagaagaaaaggttgatgaatttatgattgttcccaatatagatcattcgcacaga
gaaactatgaaagtttcatttttagattacctgccttcggacactatatttataagtaaa
gatttttctttgactttagctaatattgaaaaaaaattttcaaaggcagaagaggtttat
gctaccttatcgcaaagtataaaacgcagtgagcctaaagagctttatatacaatcccat
gagctgatttctaaaatagttcagaattcatttattgaattctcctcaatcccttatttt
aatgaatttaaaacagtacggctggatcaaacagagcaaccgagttttcataaacaattt
gacttgttagggcaagatttgcttgaaaaagaaaaatcacattataagaattacattgcg
tttcaatccgaaaaacaggaaagcagattacaagatattttttcagaaattgaaaaagaa
gtgccttttataggttttcatgccaatgtaagtaaaggatttatagatcataattctaaa
tttcttatctatacggatcatcaaattttcgaaagatatcaccgatacaatttgcgaaat
tcattttctaagtcagaatccttaacacttaaagagttaacagacttaaaagtgggagat
tatgtaacccatattgatcacgggatcggtaaatttatgggattggtgaaaattaaaaat
gatgataagttacaagaaaccatcaaactggtatataaaaataatgacatcttatatgta
aatatccattccttacataaaatctcaaaattttcaggaaaagaaggcgcagaagttact
cttaaccaattggggtcggcagcgtggaaaaaccttaagaataaggcaaaaagaaaagtt
aaggaagttgcttttgaccttataaaactttatgccgacaggaaaactaagaaaggattt
tctttttcacccgacggatatttacaaaatgaactggaagcctcttttatgtatgaagat
actccggatcaagaaaaagctacccaagacgttaaaagcgacatggaaaaacctattgct
atggataggcttatttgtggggatgtaggatttggtaaaacggaaattgccataagggca
gcttttaaagcggctacagatggaaaacaaagcgcaattatggttccgaccaccatattg
gctttgcaacactataaaacttttatgtccagactaaaagattttcctgtacgtattgaa
tatttaaatcgatttaaaactgccggacaaaaaaaagaaataatcaaatctcttgccgaa
ggaaaaattgatattattataggaactcatcaattaatcggtaaggatgtcgtttttaaa
gatttaggcttattaattattgatgaagagcataaattcggagtatccgtaaaagataaa
ttaaagacattaaaaacaacggtagatacgttaacgttaaccgccactccaatccccaga
actttacaattttctttaatggcggctcgcgatatgtctgttattaagactccgcctccc
aataggcagcccgttcagactcaacttattggttttaatgaagaacaaatccgggatgcc
atcatttatgaattaaacagagaaggacaaatattatttatcaataatagaattgaaaat
ttggatgtgctcgcagggatgattaagcgcttggttcctatggcccgagtggccattgga
catggtcaaatggagggaaagaaacttgagaaaattatgattgactttatggaggggaat
tacgatgtcttaatttcaactacaattattgaatccggtttagatgttccaaatgcaaat
acaatttttattaatgatgctcaaagattcggtttagcagatttacatcaaatgaggggg
agggtaggaagatccaatcgaaaagctttttgttatctcatcactccgcctttagacgtt
atcacatccgaagccagaaagcgtttacaagcaatagaacaattttcagatctgggttcc
gggtttaatatagccatgaaagatttggaaatacgaggagccggcgatttgttaggtgcc
gagcaaagcggtttttttgcagaaatcggatttgaggcttaccaacaaattttaaatgaa
gctatagaagaattaaaagaagatgaattttcagatttgtttgttgaagaaaatgagaag
aaggaatttattacagatgtacaaattgataccgattttgaattattaatacccgatcaa
tatgtaaataaggtagaagaacgattttcactttatcaaaaattatctgaaattactaat
gaagaagaacttaccaattttaaaaacgagcttatagatcgttttggcaaattacctgat
caaactcaagatttattaaagagtgttaagttaaaatggatttccaaatatattggattt
gaaaaattattaattaaaaataatgttttgttggcctattttccaattaatgctcaatct
aaatattatcaatcagatacttttaagaaagttctggaatatttacaaaataacccttct
gatgcttcattaaaacaaaaaaacgtacatgataatttacagctttatttaagaaaagac
aagatattgaaaatagacgatgtactttattttttggaaagaattcatgcatttatcgat
gaatag
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