Anas platyrhynchos (mallard): 101796454
Help
Entry
101796454 CDS
T02816
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101796454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apla03021
]
101796454
03019 Messenger RNA biogenesis [BR:
apla03019
]
101796454
Transcription machinery [BR:
apla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101796454
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101796454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
101796454
NCBI-ProteinID:
XP_038033422
Ensembl:
ENSAPLG00000012231
EnsemblRapid:
ENSAPLG00030028562
LinkDB
All DBs
Position
1:201058598..201079979
Genome browser
AA seq
1691 aa
AA seq
DB search
MSAPPEGSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEA
QIAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAV
TSGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQ
QGSSTIASVPAPSKPHVSQTPHMTVKPPHQTSVQSEKIKPSPSPPLHDIKIVNRDPRLNR
MAQHSSHAKDQSHRKEFPPNTTSQSDTKASKTSQAEKQNSTKQEKLKAGEKIQKKELDQS
EAKSKSPSPLKNKLPSTKDTKNQESESTKVSEISKRDPRLKRHLQEKPEGKEDEVKEKRR
NVEKKEKEEHKTCEHRPVGSRNKVVNGVVQKQDTPTEESEKQGGKQGRSSNRKRSRSRSP
KSRSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEPTQAARDERNS
NKRNVKQEVRDPRRVKKAQEDRPQETASQHSTKASPDPKENAENWQGSKAGKRWKSGWEE
NKNSQQSEEHQALGKAPHQRHRENWTAAKGILSPRAPKQQHRLSVDANLQIPKELTSASK
RELLKKANDRLASGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCVLKKKPLL
SDAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQF
DRKEPFGERSRRHSPVSGTNRPFPDNLSPLESRRRLEEQNATKGARGSKTFDPYDSWGES
EEFRDALRQQGKGTPEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRARYE
DLEKAPFPESPVARFGGIEAKQRISALMEDRPLFDGSPRQPPARVGVDGPGSPFGDGPAA
GSASRIDGPPGQAALRFEGPLVGAGASQFDGPLAGAGGAGALRFEGPPGQLAGALRFEGP
PGQVGGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFDGPRGQPSGGLRFEGPH
GQPLGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPH
GQPMGPHGPSGGGLRFEGPHGPPGVGPRLIDGPVHQGAGGLRFDGPLGRTGPRFDGCHAG
FDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQGQARFDTAIPQRFDGPHQPASRFDLPHG
LQGARFENVANHPASRLEMSPYGQGGPFGDHPSQGYNGPSHGMQFQRPDIFDGSPGPNFN
GPAGPGAQNFSLRASGHYFDEKNLQGPQYGGFNSMAVGSNQVSLMSAQLGPYGQGQQYLP
NPGSFVQNPAGGLPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQVNETSAQPA
AEEEDDDQSDQDVPDLTNFAVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHL
DWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQE
AAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDY
QNTSSFDCTPSPSKNPVESPLNIMLNIVKQETQESCDSPKVKEEPDDTPPACAEESTPAS
TDIKTEPDESV
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccgccggagggcagcgctggtagcagcgaggcccgggaggacgcgtgtcgc
gattaccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctg
accatcctggctgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcg
caaatcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccatt
gtcaagaatgtgggaagagagtatcttactgcatttactaaaaacctagttgcaacattt
atttgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctcc
acatgggatgatatttttcctttgaagaaactatatgcccttgatgtcagagtcaactca
ttagatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccat
gtgaatcctaagtttttaaataaatcgccagaagaatctactgcacctacctctgctgtc
acttctggtgcctctactcctccagctgttcctgaaatacagaagaatttgacacaagag
caactgataaggcagcaattgcttgcaaagcaaaaacagttgttagaacttcagcaaaaa
aaattagagctggagctggaacagactaaagcacagttggctgtttctcttagcgttcaa
caaggatcatctactatagcttcagttccagcaccttccaagccacatgtgtctcagaca
cctcatatgacagttaaaccacctcatcagacttctgtgcaatccgaaaaaatcaaacca
tccccaagtcctccacttcatgatatcaaaatagtaaatagggatcctcgacttaatagg
atggctcaacattcttctcatgctaaagatcaatctcataggaaagaatttccaccaaac
acaaccagtcagtctgataccaaggcaagcaaaacatcacaggctgaaaaacaaaactcc
acaaagcaagagaaattgaaagcaggtgaaaaaatacagaagaaagagcttgatcagtca
gaagcaaaatctaaatcaccatctcctttgaaaaacaagttacccagtactaaagatact
aaaaaccaggaaagtgaaagcacaaaagtatctgaaatcagtaaacgggatccaagactg
aaaagacatcttcaggaaaagccagagggcaaggaggatgaggtgaaagagaagaggaga
aatgtagagaaaaaagaaaaagaggaacataagacatgtgaacatagaccagtaggcagc
agaaataaagtagttaatggtgttgttcagaaacaagacacacctacagaagaatcagaa
aaacagggtggaaaacaagggagatcaagtaacagaaaacggtcacggtcacgctctcct
aagtcacggtcaccatctacacattctccaaaaagaagagagaggagatcacccaaaaga
agactcagaagcttatctcccacttcgtcaactcctaaaatcggaaagatacgtcagata
ggtcctaagcagtctcatgttgaagaacccacacaggcagcaagagatgaaagaaattct
aataagcggaacgtgaaacaagaggtgcgagatccacggagagtgaaaaaagcccaagaa
gacaggcctcaagaaacagcaagtcagcattctacaaaagcttctcccgatccaaaggag
aatgcagaaaactggcagggatccaaagcaggcaagaggtggaaatctggttgggaagaa
aacaaaaactcgcagcagagtgaagagcaccaagcacttggtaaagctcctcaccaaaga
caccgggaaaactggactgctgctaaaggaattttatcaccccgagcaccaaagcagcag
cacaggttaagtgtggatgccaatttacaaattcccaaagaattgacatctgcaagcaag
agagaattacttaaaaaggccaatgatcgcttagcatctggtgaaataactcaagatgaa
ttcctcatggtagctcatcagattcgacagctgttccagtaccaggaagggaagcacaga
tgtaatgtgtgggatagccctacagaggagaaatgtgttttgaaaaagaaacctcttcta
tctgatgcagaattaacatactacgaacacaaagctaaattaaaaagaacccaagttcag
cattcattatcaaggcttgatctgttggatcccgatgatattttggattatcatttacct
gatgcgttgctttctggaatagaatgtgagcaagcaaaagcaaagcgtggagtacagttt
gacagaaaagagccatttggagaaagatctaggaggcattctcctgtaagtggcactaac
agaccttttcctgataacctttcaccgcttgagagtcgacgaagacttgaggaacaaaat
gctactaaaggagcaagaggttctaaaacattcgatccttatgacagctggggagaatca
gaggaatttagagatgctctcagacaacagggaaaaggcacaccggagttccagaaaata
gatggtgatgcaatctgcagatttgataatcgtgaagaaagacagcttctcgggcaagct
ggtgttcgagaggaaccaagatcgccattcagtgagcgtttcaaaagagctagatatgaa
gatctggagaaagcaccatttccagaaagtccagtagcaagatttggaggcattgaagcc
aagcagagaataagtgcactaatggaagacagacctctattcgatggctcacctagacaa
cctcctgcaagggttggggtagatggaccgggaagtccttttggtgatggtcctgctgct
ggttcagcttctcgaattgatgggccacctggacaggctgctctgagatttgaggggccg
ttggtcggagcaggtgcatcacagttcgatggaccgctggcgggggcagggggagcagga
gccctgagatttgaggggccaccagggcagctggcaggggcactcagatttgaaggaccc
ccaggacaggttggaggaggaggtccactgaggtttgagggacctcttgggcctttgcgc
tttgagggtcctgcaggccagcctgtaggtggtcctagatttgaaggacctggagttggt
ctcaggtttgacggaccccgtggtcagccttcaggtggtctcaggtttgagggaccccat
ggtcaacctctggggcctcgaggtcaaccagggggtggtctcaggtttgagggaccccat
ggtcagcccttggggcctcatggtcaaccagggggtggtctcaggtttgaggggccacat
ttacagcccttggggccccatggtcaacctggaggtggcctcagatttgaggggccacat
gggcagcctatggggccacatggaccatcagggggtgggctcaggtttgaggggccacat
ggacctccaggtgtaggtcctaggttgattgacggaccagtacaccagggagctggtgga
cttagatttgatggtcctctgggacggacgggtccaagattcgatggctgtcatgctgga
tttgatggtcagcctggacagctatctcttttgcaaagatttgacggaattcatggacag
cctggcccaagatttgaaagggcacctggccagcagggacaggcacgattcgatacagcc
atacctcaaagatttgatggtcctcaccagccagcctcaaggtttgacctgccccatggc
cttcaaggtgcacggttcgaaaatgtagctaaccatcctgcctcaagattagaaatgtcg
ccgtatggacaaggtggtccgttcggtgatcatcccagccagggctacaatggaccatct
catgggatgcagttccagaggcctgacatatttgatggttcgccaggaccaaatttcaat
gggccagctggcccaggagcacagaatttctcattgagagcatctggacattattttgac
gaaaaaaaccttcagggtcctcagtatggaggcttcaatagtatggcagtgggaagtaat
caggtttcgctcatgtctgctcagctaggaccgtatggccaaggtcagcagtatttgcca
aatcctggaagctttgttcagaaccctgcaggaggccttccacattcatatcctgataac
caccttggccagcttgatgtcaatgaattgtttgctaaactgttgtcaacaggaattctc
aaactgtcaaaaactgattccacttcagcacaagtgaatgaaacatcagcccagccagct
gctgaagaggaggatgatgaccagagtgatcaagatgtcccagacctcacaaactttgca
gttgaagaactcagacagcgttatgatagtgttattaatcgactatacactggaattcag
tgttactcgtgtggaatgagatttactacttcacagacagatgtttatgccgatcattta
gattggcattatcgccagaaccgcacagaaaaagatgttagcagaaaaattacacacaga
aggtggtactacagtttaacagattggattgaatttgaagaaatagctgatctagaggaa
cgtgcaaaaagccaattttttgaaaaagcccatgaagaagttgtgctcaagacacaagaa
gctgcaaaagagaaagagtttcagagtgtccctgctggaccagctggagcagttgaaagc
tgtgaaatttgccaagagcaatttgaacaatactgggacgaggaagaggaagagtggcac
ctaaagaatgctatacgagtagatgaaaagatttaccatccatcttgttatgaagactac
caaaatacatcatcatttgattgcacaccatctcccagcaagaatcctgtagaaagtcct
ctaaatattatgttgaacattgttaaacaagaaacacaagagtcctgtgactcgcctaaa
gtcaaagaagaacctgatgacacccctcctgcctgtgcagaagagagcacacctgcatct
acagatattaaaacagaacctgatgagtctgtttaa
DBGET
integrated database retrieval system
