KEGG   Anas platyrhynchos (mallard): 101796914
Entry
101796914         CDS       T02816                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla03030  DNA replication
apla03410  Base excision repair
apla03420  Nucleotide excision repair
apla03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:apla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101796914 (LIG1)
   03410 Base excision repair
    101796914 (LIG1)
   03420 Nucleotide excision repair
    101796914 (LIG1)
   03430 Mismatch repair
    101796914 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apla03032]
    101796914 (LIG1)
   03400 DNA repair and recombination proteins [BR:apla03400]
    101796914 (LIG1)
Enzymes [BR:apla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     101796914 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     101796914 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     101796914 (LIG1)
DNA replication proteins [BR:apla03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    101796914 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     101796914 (LIG1)
DNA repair and recombination proteins [BR:apla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     101796914 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     101796914 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     101796914 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR
Other DBs
NCBI-GeneID: 101796914
NCBI-ProteinID: XP_038035116
Ensembl: ENSAPLG00000013201
EnsemblRapid: ENSAPLG00030009656
LinkDB
Position
5:55300848..55307505
AA seq 775 aa
MAAPPRLPPSSRGRAPPAPPPPPRSRRRSPPGTPPGTPPRSRHRWKEGTPMGGGRPPPGP
RSETPRALYPPHPPTPPGAPPTPGVPGDEVGPPPAKRCRQAPSDQDRGPLAASSPPPLDP
SQYDPARSGYHPLQDACWGHGQSVPYLAVARTFERIEEASARLKIIETLSNFLRSVLALS
PGELLPCLRLCLNRPGAPSEGLELGIGESLLTRALAQATGRQLAQIRSEAQDKGDLGLVA
ESSRCTQRTVVAPAPLSAAGVLGKLREMATMSGNASANKKIGIIKGLFVACRHSEARYLV
RSLSGKLRIGLAEQSVLTALAHAVALTPPGQGWPPAVLDAGQGMAPEARRAWLEEQSRIL
KQTFCELPDYAAIVPVLLEHGLEKLPQHCGITPGVPLKPMLAQPARGVGELLKRFEEAAF
TCEYKYDGERAQIHVLESGAVFIYSRNQENTTAKYPDLVDRIPKVLKPGVRSCILDAEAV
AWDRTTRQIQPFQVLMTRKRKDVDAAAIKVQVCLYAFDLLYLNGEPLVRQPLSARRKLLR
ESFEEVEGEFVFATSADTRSAEEVSEFLDKAIKASCEGLMVKTLEVDATYEIAKRSHKWL
KLKKDYLDGLGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKIGTGFTEE
SLEKHYGFLKEHVLAQPRPYYRWDSGAAPDRWLAAVQVWEVKCGDLSISPVYRAAVGLVD
EEKGISLRFPRFLRVREDKKPEEATSSTQVAELYKKQQQIQNQQQAEKGEDEEFY
NT seq 2328 nt   +upstreamnt  +downstreamnt
atggcggcgccgccccggctcccgcccagcagcaggggcagggccccccccgcgccccct
ccccctcctcggagccgtcggcggagcccccccgggaccccccccgggaccccccccagg
agccggcatcgctggaaggaggggaccccgatgggcgggggccgccctcctccgggaccc
cggtcggagaccccccgggccctgtaccccccccaccccccgactccccccggtgccccc
cccaccccgggggtcccgggggatgaggtcgggcccccccccgccaagcgctgccgccag
gctcccagtgaccaggaccggggacctctggccgccagcagccccccgccgctggacccg
tcccagtacgaccccgccaggagtgggtaccacccgctgcaggacgcctgctgggggcat
gggcaaagtgtcccctacctggcggtggctcgcaccttcgagcgcattgaggaagcctca
gcccggctgaagatcatcgagaccctcagcaatttcctgcgctcggtgctggccctgtcc
ccgggggagctcctgccctgcctgcgcctctgcctcaaccgcccgggggccccctccgag
gggctggagctgggcatcggcgagagcctcctgacccgtgccctcgcccaggccaccggc
cggcagctggcgcagatccgcagcgaggcgcaggacaagggggacctggggctggtggcg
gagagcagccgctgcacccagcgcaccgtggtggctcccgccccgctcagtgctgctgga
gtgctgggcaagctgcgggagatggccaccatgtcgggcaacgcctcggccaacaagaag
atcggcatcatcaaggggctcttcgtcgcctgccggcactcggaggcgcgctacctcgtc
cggtcactcagcgggaagctgcgcatcgggctggccgagcagtcggtgctcaccgccctg
gcgcacgccgtggcgctcacccccccggggcaagggtggccgccagctgtgctggatgcc
gggcagggcatggcccccgaggcacgcagggcatggctggaggagcagagccgaatcctc
aagcagaccttctgcgagctgcctgactacgctgccatcgtcccggtgctgctggagcac
gggctggagaagctgccccagcactgcggcatcaccccaggtgtccccctgaagcccatg
ctggcccagcctgcccgtggcgtaggggagctgctgaagcgcttcgaggaggcagcgttc
acctgcgagtataaatatgatggcgagcgagcccagatccacgtcctggagagtggggcc
gtcttcatctacagccgcaaccaggagaacaccaccgccaagtaccccgacctcgtggac
cgcatccccaaggtgctgaagcctggcgtgcgctcctgcatcctggatgcggaggccgtg
gcgtgggatcggaccacaaggcagatccagcccttccaggtgctgatgacgaggaagagg
aaggacgtggatgccgctgccatcaaggtgcaggtctgcctctacgccttcgacctgctc
tacctcaacggggagcccctggtgcggcagcccctgtctgcgcggcgcaagctcctgcgg
gagtccttcgaggaggtggagggcgagttcgtcttcgccacctccgccgacacccgcagc
gccgaggaggtctcggagttcctcgacaaggccatcaaggcctcctgcgagggcctcatg
gtgaagaccctggaggtggacgccacctacgagatcgccaagcggtcgcacaagtggttg
aagctgaagaaggactacctggacgggcttggggacacgctggacctggtggtcatcggc
gcctacctgggcaagggcaagcgtgcaggcatctacgggggcttcctgctggcctgctac
gacgaggagagcgaggagtaccagagcatctgcaagatcggcaccggtttcacggaggag
agcctggagaagcactacggcttcctcaaggagcacgtcctggcccagccacgtccctat
taccgctgggacagcggggcagcccccgaccgctggctggcagcagtgcaggtctgggag
gtgaagtgcggggacctctccatctcccccgtctatagggcagccgtggggctggtggac
gaggagaagggcatctcgctgcgcttcccccggttccttcgcgtgagggaggacaagaag
cccgaggaggccaccagcagcacccaggtggctgagctgtacaagaagcagcagcagatc
cagaaccagcagcaggcagagaaaggggaggacgaggagttttactga

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