KEGG   Anas platyrhynchos (mallard): 101804830
Entry
101804830         CDS       T02816                                 
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:apla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    101804830 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:apla03400]
    101804830 (LIG4)
Enzymes [BR:apla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     101804830 (LIG4)
DNA repair and recombination proteins [BR:apla03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     101804830 (LIG4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV BRCT DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 101804830
NCBI-ProteinID: XP_027299855
Ensembl: ENSAPLG00000001673
EnsemblRapid: ENSAPLG00030008361
LinkDB
Position
1:147160104..147164247
AA seq 976 aa
MRGRRAPPLPPPLRVGPNHCVCGGGGGEPPADTAAALLPFRSKGPRGGRRGCGFHRRFTG
SAEEGSRMASPQPPPRRTVASHVPFADLCATLERMQACKTRPEKTKYFKDFLDSWRKFHH
ALHQKEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLN
YRTPAGSRGDAGDFAMIAYFVLKPRSPKRGRLTVEQVNELLDAIANNNAARNKGQLKKSL
LQLITQSTALEQKWLIRMIIKDLKLGISQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDP
TVSLSDVSITLFSAFKPMLAAIADVQQIEKQMNNQTFYIETKLDGERIQMHKDGDVYKYF
SRNGFDYTQQFGASPLDGSLTPFIHKVFKDNIQNCILDGEMMAYNPETQTFMQKGNKFDI
KRMVEDSDLQTCFCVFDVLMVNDQKLGHEALSKRYEILSNVFTPVTGRIHVVHKKTARTR
KEVIDALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYW
GKGLRGGMMSHFLCAIAETPAPNEKPTVFHSICRIGSGYTMKELHDLGLKLAKHWKPYHR
RDPPCNILCGIEKPEVYIEPCNSVIVQVKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWY
ECMTLDMLADLRSRAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKVIGIAEQFKAPDLSN
VNKVSNVFEDVEFCVMTGTGKHSKSELESRIAECGGSVVQNPGPDTYCVIAGAENVRVKN
IIASNKYDVVKAEWLLQCFQSKMLVPWQPAVMIHMSPDTKEHFAREYDCYGDSYTADTDV
AQLKEVFSRMKDNKIMPLDVIAELEERYSWNSCQLSIFRGNTIYVDCYAVVNEPRTKIHG
TRLSIRALELRFYGAKVVSCLEEGVSHVIIGEDHSRVEEMKALRRTFGKKFKIVSELWVT
ESVKEGVPKNENQYLI
NT seq 2931 nt   +upstreamnt  +downstreamnt
atgcgcggccgccgcgctccccctctcccccctcccctccgcgtcggaccgaaccactgc
gtgtgtggagggggggggggggagcccccggccgacaccgccgccgcgctcctccccttc
cggagcaaagggccgaggggcggccgccgcggctgcgggtttcaccggcgcttcaccggc
tccgccgaggaagggtctcggatggcttccccgcagccgcctcctcgcaggacggtcgcc
tcgcacgtgcccttcgcggacctgtgcgccaccctggagcggatgcaggcctgcaagacc
cggccggagaaaaccaagtacttcaaggacttcctggactcgtggagaaagttccaccac
gctcttcaccagaaggagaaggacgtcaccgattcgttttatccggccatgcggctcatt
ctcccgcagctggagagggagaggatggcgtacgggattaaggaaaccatgctcgccaag
ctgtacatcgagctgctcaatttgcccaaagatgggaaggacgctgcgaagcttttaaac
tacaggacgcctgccggttcgcgtggggatgctggagactttgccatgattgcatacttt
gtcttaaaacctaggagccccaaacgaggcaggctgacagtggaacaggtcaacgaactg
ttagatgccatagctaacaataatgctgctagaaacaaggggcagttaaagaaaagcctt
cttcagttaattacccagagcacagcgcttgagcaaaagtggctcatccggatgattata
aaggatctaaaactgggtattagtcaacaaactatattttccatttttcatcccgatgct
gttgaattacacaatgtcacgacagatttggaaaaagtttgtagacaactgcatgatccc
actgtctcacttagcgatgtttctatcacgttattttctgcctttaagcctatgcttgct
gctattgccgatgtccagcaaattgagaaacaaatgaataaccagacattctacatagaa
actaaactggacggtgaacgtatacagatgcacaaagatggtgatgtgtataaatatttt
tccagaaatgggtttgactatactcagcagtttggtgcttccccccttgatggctcatta
acaccatttattcataaagtatttaaagacaacatacaaaattgcattcttgatggcgaa
atgatggcttacaatcctgagacacaaaccttcatgcaaaaaggaaacaaatttgacata
aaacgaatggtggaggactctgatctgcagacctgcttctgtgtgtttgatgtgctgatg
gttaatgatcagaagttgggtcatgaagcactgagcaaaaggtacgagatcttaagcaat
gtatttaccccagtaacaggcaggatacatgtcgtacataaaaaaactgccagaacgaga
aaagaagtaattgatgctttaaatgaagcaattgataacagagaggaagggattatggtc
aaagatcccatgtccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaag
ccggaatacgtcaatgggctgatggacgagctcgaccttctgatagttggtggttactgg
ggaaagggcttacgtggtggaatgatgtctcattttctgtgtgcgattgcagagactccc
gctccaaacgaaaaacctactgttttccactctatttgtcgcattggctctggctacact
atgaaggaattgcatgatctgggtttgaaactggctaaacactggaagccctaccatagg
agggaccctccctgtaacattttgtgtggcattgaaaaacctgaagtgtacattgaacct
tgtaactccgtcatcgttcaggtcaaggcagctgagattgttaacagcgatatgtacaaa
actgactgtaccttgagattcccccgaattgagaaaataagagaggacaaagaatggtat
gaatgcatgactttggacatgctcgcagatctcagaagtagagcagaagggaagctggcg
tccaagcaccttcatattgacgaatatgatgagccgcaagagaagaaaaggaaaactgta
tcgaaggtgaagaaggtaatcggaatagccgagcaatttaaagctcctgatctttctaat
gtaaacaaggtttcaaatgtgtttgaagatgtagagttttgtgttatgacaggtacagga
aaacactccaaatctgaactggaaagccgaatagccgaatgtggtgggagtgtggtacag
aaccctggaccggacacttactgtgtcatcgcgggagctgagaacgtcagagtgaaaaac
atcattgcttccaacaaatacgatgtggtgaaggcagagtggcttctgcagtgttttcag
tccaaaatgcttgtgccttggcagccagccgttatgattcacatgtctcctgacactaaa
gaacattttgctcgtgagtatgattgctatggagacagctacacagcagatacagatgtt
gcacaactcaaggaagtattctcaagaatgaaggataataaaataatgcccttggacgtg
attgctgagttagaagaacgttactcatggaacagctgtcaactcagtatattcagagga
aacactatttatgtggactgttatgctgttgttaatgaacccagaaccaaaatccacgga
acaagactatcaattagagctttggagctccgtttttatggggcaaaagtagtctcttgc
cttgaagaaggtgtctcccatgtcattataggagaagatcattctcgggtagaagaaatg
aaagcactcaggagaacatttgggaaaaaatttaagattgtatctgagctgtgggtaaca
gagtcggtgaaggagggagtcccaaagaatgaaaatcagtacttgatttaa

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