Anas platyrhynchos (mallard): 101804967
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Entry
101804967 CDS
T02816
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03013
Nucleocytoplasmic transport
apla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101804967 (UPF1)
03015 mRNA surveillance pathway
101804967 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101804967 (UPF1)
Enzymes [BR:
apla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101804967 (UPF1)
5.6.2.5 RNA 5'-3' helicase
101804967 (UPF1)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101804967 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101804967 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101804967
NCBI-ProteinID:
XP_038025181
Ensembl:
ENSAPLG00000009175
EnsemblRapid:
ENSAPLG00030027496
LinkDB
All DBs
Position
29:complement(1489969..1512090)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAAQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacactcaaggctccgagttcgagtttaccgacttcaccctc
cccagtcagacccagacaccgccagggcccggtcaggcagggccgggacaaggccaaggc
ccccccggagcggcccaaggcccgccaggccccatcgaggcgcaggttaatggacctgat
ggcattctgcagaatggagcagtagatgataacgtagctaaaaccagccagcttctggca
gagctgaactttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcctgtgtggtttactgtaacaccagcaag
aagtggttctgcaatgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcgaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcttg
gaatgttataactgcggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgcgagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcgtgg
ctggtgaagattccatctgagcaggaacagttgagagcacgtcagattacagctcagcag
attaacaaactggaagaactttggaaggaaaatccatctgcaactcttgaggacttagaa
aagcctggtgttgatgaagagccacagcatgtcctactcagatatgaagatgcttatcaa
taccagaatatatttggtcctctagtcaagcttgaggctgactatgacaagaagctcaaa
gagtcgcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgattcagatatgcgtctaatgcaaggagatgag
atctgcttgaggtataaaggagacctggcccctttgtggaaaggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcccctgtggaagttactcataacttccaagtggattttgtatggaagtctact
tcatttgacagaatgcagagtgctttgaaaacatttgctgtggatgagacttcagtgtca
gggtacatctatcacaaactgttaggccatgaggtagaagatgtaattattaaatgtcag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttattcagggtcctcctggtaccggaaaa
acagtgacatcagctacaatcgtctatcatctggctagacagggcaatgggcctgtgtta
gtctgtgctccgagtaatatagctgtagatcagttgactgagaagattcatcaaactgga
ctgaaggtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgtgtccttc
ttggcattgcataaccagatcagaaacatggatagcatgccagagcttcagaaactgcag
cagcttaaagatgaaactggagaactgtcatctgctgatgagaagcgctaccgtgcacta
aaacgaacagcagaacgtgaattacttatgaatgcagatgtgatctgttgcacgtgtgtg
ggagctggtgatccaaggcttgcaaagatgcagttccgctccattctgattgatgaaagc
acccaggctactgagccagagtgcatggtgccagttgtcctgggagcgaaacagcttatc
cttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagctgcgaaggct
ggcctgtctcagtctctctttgagaggctcgtggtgctggggattcgcccgattcgcctg
caagtgcagtaccgcatgcatcctgcacttagtgcttttccatccaatatcttctacgag
ggttcactccagaatggtgttactgcagctgaccgtgtgaaaaaaggatttgatttccag
tggccgcagccagataaaccgatgtttttctacgttacgcaaggacaggaagaaattgcc
agctcgggcacctcttacttaaacaggactgaagctgccaatgtagagaagataactaca
aagctattgaaagctggtgccaaaccagatcagattggaattattactccttatgaaggt
caacgatcctatctggtgcagtacatgcagttcagtggttccttgcatacaaaactctac
caggaagtagaaattgcgagtgtggatgccttccaaggaagagagaaggactttattatc
ctttcttgtgtgagggccaacgaacaccaaggaataggatttctgaatgaccccaggcgt
cttaatgtggctctaacaagagcaagatatggagtaattattgttgggaacccaaaagcg
ctctccaaacaaccactttggaatcacctgctgaattattacaaggagcagaaagttcta
gtggagggaccactgaataacctccgggaaagccttatgcagttcagcaagccccgaaaa
ctcgtcaatactatcaacccaggtgcccgtttcatgactactgccatgtatgatgcacgt
gaagctattattccaggatctgtctatgaccgaagcagtcaagggcgcccatccaacatg
tacttccaaacccacgaccagatcgggatgattagtgccggccccagccacgtcactgct
atgaacattcctatccctttcaacctcgtgatgccaccgatgccaccaccgggatacttt
ggccaggctaacggaccagctgcaggacgtggggcgccaaaaggaaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttccaaatagt
caagcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgcgcatatcaacatggcggagtgacgggactgtcacagtat
tag
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integrated database retrieval system
