Agrilus planipennis (emerald ash borer): 108733341
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Entry
108733341 CDS
T07419
Name
(RefSeq) uncharacterized protein LOC108733341
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
apln
Agrilus planipennis (emerald ash borer)
Pathway
apln03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
apln00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108733341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apln03021
]
108733341
03019 Messenger RNA biogenesis [BR:
apln03019
]
108733341
Transcription machinery [BR:
apln03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108733341
Messenger RNA biogenesis [BR:
apln03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108733341
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
108733341
NCBI-ProteinID:
XP_018319947
UniProt:
A0A1W4WHK2
LinkDB
All DBs
Position
Unknown
AA seq
1798 aa
AA seq
DB search
MASSNEVKEEYASSLRDLTFNSKPLISVLTILAEENIQHAKDIVGVIENHLTRVRTEVKL
PVLYLIDCIIKNVGREYTSLFCQNIVSTFCSVFEQVDEKTRSEMFKLRQTWNDVLPQKKL
YALDVQIKQLDPAWPVTAPPPNNSIHLNPKFLKNAPTGVTKASTGKIVPVSGGSSVDPET
LSMQQKLINKQKELLELQQRKLELELLQTQVRLQEQLKGKIVSSSTSDTKTVTSQKTTSA
HSQNLLLKPGVTKELSPTINVKPSTGSNLRSKYSQSLSAMKSKLLQQQQTASDQTTTPHV
APVNSALVNAQRPTRDPRLLRLQEKQQEGDRQQVSATENVNSNVHLESKSKTTSPQIIQS
ENKVVTNKMSVRDNRTEPRSVSKNKSFGQGKSKTLPTRSSSPIKPSPKTSATSKKTTSKF
SHGSKSSTSSASDFSGSSSSIDSPSKSKNGFYSKNRSPSKSPLKAKKKSFLVTADKEKLG
QKRDDSSPRNKNPELGYVASECTEIVCNDKKSDKLPTAICKSDKVMKTFKSDSSSIIKEL
KPSAKNRNYMRRNREASISPEPPHDVDLRVSGPPEKHLRLQGDTSDCKSDNLDNPGMDVD
LRQLPGMIGKKRPSTETADSPSLKKAKTELFDVLFGSEDTDLRQLPPVSPKIVERPKTPP
PPIISEVKESSPQLVLSRDKESPKKTHLDLLRAKLASATHRDKFEKMQFSSVEKDDSKAY
EDTDMRKFTSLEKVDRIFISPADEQCIKTGNMTKAQETALMNKIIAQIETQKLREAKRKE
SEASTVLQPISDDELDVDGEFSGSDIEDVNSGHAKSVDYGDKDDRVTPAFNQSDENFSKQ
PMSIDPREIRRPAWRGRRIRGTWENYPGGIVGPFRPPFRGRQDPWIRSSNPTMHPGPWRP
MNSGYLRSHPYGENLGHDGSEQSQGSPNAYPTGEETPGDIVFSESIQDGVKTINIDGVPR
VIRFYDETAVIFMSWDDPREISFQVGNRGVTFDDKDTFVLSFGDNYREVLIGGSPHKIRF
GGPTKEIFIDGKGYECYFGSPGISIDLDGKMAHLKLDGPPPQVKIGTTKRTDLVAGRINL
IVDAKIIIPVYLDCKVQHFEVNGKLHKLKFINSLKKVIIDDIVYPITFGGLPKAVILSGT
KRFIRFSVLPKGIKPGNVVIKDMENIGIYDSSPKPENENSQDSLSTEQSKIAEAVIPASE
PKSLPLGVEDDADRNSNDPQIFQNFISQQSFNNLDLLSNVMTTSMSSSANASSYQIEDND
HQTISDNTTHLTSTEETPKPILPPTLNINELFQKLVATGIVTTISSSLSTIKSTDAVTTS
ASKAPVTPAKLQTSNKIQKFLEDSKPVYFDKPETLKMRQPSLIQALYVGMQCSSCGMRFP
PELSMHYSQHLDWHFRQNRKGKKNIRKAASRKWYYSLTDWKNFEEIEDIEEREKSYFENQ
SHVEGNPNEEEEEIEIPSVPADKDVQDACCEVCKERFEQFYNEEKEEWHLRMAIRVDGKT
YHPLCHEDYLASLVDQTLLEDSKLSISHTDEEESKDNIPGLEVSEEPVVLDDDELEVIED
TGSADYEKEQTKEEPSELKEEDVEKQEENAEEEDDDDDVIIHEVIPEKIVVDDDDDEELP
LEEISAEKKPIVVKEEIIDDGFVDVENGILQIKSAGTVKIKSEPIDPDELVVEDELEEER
PCSSQGNIEFKPSIDGNVEYNTTTIPTTNTSIAGKIKINISKPIVTTALIKETKESVLDV
NTECILSGHEICIDPSQPLPPGEEPVQLNVKPALQGVYLKKLPTVKKGTELTGLCSIM
NT seq
5397 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcagtaatgaagttaaagaggaatatgcatcgagtttgcgagatctcaccttt
aatagcaaaccgttaattagtgttctaaccatattagcagaggagaacattcagcatgct
aaagatatagttggagtcatagaaaatcatcttacaagggttcgtactgaggtcaagctt
ccagttctctatctgattgattgtattatcaagaatgttggaagagagtacacatcactt
ttttgtcaaaatatcgtctctacgttctgcagtgtctttgaacaggtagatgaaaaaaca
cgttcagaaatgtttaaactacgccagacttggaatgatgtgctaccacaaaagaaactg
tatgccttggatgttcaaataaaacaactcgatccagcttggcctgttacagctcctccg
cctaataatagcattcacctcaatcccaaattcctaaagaatgcgcctaccggtgttacc
aaagcaagtactggtaagattgttcctgtttctggtggttcttcggtagatccagaaact
ctaagcatgcaacagaaacttataaacaaacagaaggagttgctggagctgcaacagcgc
aaacttgagttagaacttctacaaacccaagttagactgcaagaacaactaaaaggaaaa
attgtatctagctctacgtcagatactaaaactgtcacatcacagaaaaccacttctgct
cattctcagaatttacttttaaaacccggggtaactaaagaattgtctccgactataaac
gtgaagccctcaactggcagtaatttaagaagcaaatattcacagagtttgtcagctatg
aaaagtaagttactgcagcaacagcaaaccgcatcagatcagactacaacaccacatgta
gcgcctgttaatagcgctttggtaaacgcacaacgaccaacacgagaccctcgattattg
cgccttcaggaaaagcagcaggaaggggaccgtcagcaagtgtcggcaaccgaaaatgta
aattctaatgttcatttagaatctaagtcaaaaactacttcaccacaaataattcaatca
gaaaataaagttgttacaaataagatgagtgttcgagacaatcgtaccgaacctcgttca
gttagtaaaaataaatcctttggtcagggaaaaagtaaaacactaccaacccgctcttcc
tctcccattaaacccagccctaagacgagtgcaacgtccaagaaaacaacctctaaattt
tcccacggctctaaatcttctactagttctgcatctgacttttctggtagttctagttct
atcgattctcctagtaaaagtaaaaacggtttttattcaaaaaatcgatctccgagtaag
tcacctcttaaagcaaaaaaaaagagttttcttgttacggcagataaagaaaagttaggt
caaaaaagggacgattctagccctcgcaataagaatcctgaacttggatatgttgcctct
gaatgtactgaaattgtttgtaatgataaaaagagtgataaactgcccactgctatatgt
aaaagtgataaggtaatgaaaactttcaaaagtgattcctcgagtattatcaaggaactt
aagccttcggcgaaaaatcgtaattatatgcgacgtaatcgagaagcttcaattagtcct
gagccaccgcacgacgtagatcttcgggtttccggtccacctgagaaacatcttcgttta
caaggagatacatcggactgcaaaagtgataatttagataatccaggtatggacgtagat
ctcaggcagttgccaggaatgattggcaaaaaacgcccatcaaccgaaacagccgattct
ccgtcgttaaagaaagccaaaacagaactatttgatgtattatttggcagtgaagacact
gatttacgacagcttcctccagtatcgcctaagattgtagaaagacctaagacgcctcca
cctccaataatttcggaagtaaaggaatcaagtccgcaattagttttgagtagggacaag
gaatctccaaagaaaactcatttggacttacttagagctaaacttgcaagtgccacgcat
agggacaaatttgaaaaaatgcaattttcttcagttgaaaaagatgattccaaagcctac
gaggacaccgacatgcgaaagttcacttctttagaaaaagtggacagaattttcatatcc
ccagcagatgaacaatgcatcaagacgggaaacatgacgaaagctcaagaaactgcttta
atgaataaaataattgcacaaatagaaacacaaaaactacgggaagccaaaagaaaagag
tctgaagcaagcactgttttacagccaattagcgacgatgaattggatgttgatggcgaa
tttagtggatccgatattgaagatgttaatagtggacatgctaaatccgtagattatggt
gataaagatgaccgagtgactccagcgttcaatcagagtgatgaaaatttctctaaacaa
cccatgagtattgatcctcgagagatcagacgaccagcttggagaggaaggcgaattcga
ggcacatgggaaaattatcctggtggcatagttggtccatttagaccaccgtttcgaggt
aggcaagatccttggatacgttcatctaatccaacaatgcatcctgggccttggaggcca
atgaattcaggatatttaagatcccatccatatggggaaaatttaggtcatgatggttca
gaacaatctcagggttctccaaacgcttatcctactggggaagaaacacctggtgacatt
gtatttagtgagtcaattcaggacggtgtaaaaactattaatattgacggtgttccaaga
gtgattagattttatgatgaaacggctgtgatttttatgagttgggatgatcctagagaa
atttctttccaagttggcaatagaggagtaacgttcgatgataaagacacgtttgtactg
tctttcggagataattatcgtgaagtactcattggtggaagtccgcataagatccgattt
ggtggtccaactaaggaaatatttatcgacggtaaaggttacgaatgctattttggttca
cctggtatatcgattgatttagatgggaaaatggctcatttaaagttggatggccctcca
ccacaagtaaaaataggaaccacaaagcgaactgatttagtagcgggaaggattaactta
attgttgatgcaaaaattataatacccgtctatcttgattgtaaagtgcaacactttgaa
gttaatggtaaacttcataagcttaagtttattaactcgcttaaaaaagtgataatagac
gacatagtatacccgataacgtttggaggcttaccaaaagcagttattttatcaggcacg
aaacgttttataagattttctgttttacctaaaggaattaagccaggaaacgttgttatc
aaggatatggaaaatattggcatatacgattctagtccaaaacctgaaaatgaaaatagt
caagatagcctttcaactgaacaatctaaaattgccgaagctgttatacctgcatctgaa
cccaaaagtctgccactgggtgtcgaagatgacgcagatagaaattcaaacgatcctcaa
atattccagaactttattagtcaacaaagtttcaataatcttgatcttctttcaaacgtt
atgacaacgtcaatgtcttcgtcggcaaatgccagtagttatcaaatcgaagataacgat
catcaaacaatttcggataatacaacacacttaacgtctactgaagaaactccaaaacca
attttgccccctactcttaatattaacgaacttttccaaaaactggtcgccactggtata
gttacaacaatatcttcttcgttgtctactataaaatcaaccgatgctgttaccacttct
gctagtaaagcaccagtaactccagctaaactgcaaactagtaataaaattcaaaaattc
cttgaagattctaagcccgtttattttgataaaccagaaactctgaaaatgagacagccg
tctttgatacaagccctatatgtgggaatgcaatgcagtagctgtggcatgcgttttcca
ccggaacttagtatgcactatagtcaacatctcgactggcatttccgtcaaaatcgaaag
ggaaagaaaaatattcgtaaagcagcaagtaggaagtggtattattcattaactgattgg
aagaatttcgaagaaattgaagacatcgaggaaagagaaaaaagttattttgaaaaccaa
agtcacgtcgaaggcaatcccaatgaagaggaggaagaaatagagatacctagtgtgccg
gctgataaagacgttcaggatgcatgctgtgaagtttgcaaagagagatttgaacagttt
tacaacgaagaaaaagaagaatggcacttacggatggccattagggtggacggaaagaca
taccatcctctatgtcatgaagactatttggcttctctggtggatcaaacacttttggaa
gacagcaagttaagcatcagtcatacagacgaagaagaaagtaaagataatattcccggc
cttgaagtctcagaggaacctgtcgttcttgatgatgacgagttagaggtgatagaagat
actggttctgctgattatgaaaaagaacaaacaaaagaagaaccttccgaattaaaagaa
gaagatgtagagaaacaggaagagaatgctgaagaggaggatgatgatgatgatgttatt
atacatgaggttatacctgaaaaaattgtcgtggatgacgatgatgacgaagaactacct
cttgaagaaatatcagcagagaaaaaacctattgtcgtgaaagaggaaattattgatgat
ggatttgttgatgtggagaatggaatcttgcaaataaagtctgctgggacagtgaagatt
aaatcagaaccaattgatcctgatgaattagtggtagaggacgagctggaagaagaaagg
ccgtgcagttcccaaggcaatattgaatttaaaccttcaattgatggaaacgttgaatac
aacactacaaccattccaacaacgaatacgtctatagccggaaaaataaaaatcaatatc
agtaaacccatagtgactacagccctaattaaagaaactaaagagtctgttctcgacgtc
aataccgagtgtattctcagcggccatgaaatatgtatcgatccgagtcagccattacca
cccggagaagaaccggtacaattaaacgttaaaccggcgttacaaggagtgtacctgaag
aaactaccaacggttaaaaaaggtacggaactgacgggtttatgttcaataatgtga
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integrated database retrieval system
