Pseudarthrobacter phenanthrenivorans: Asphe3_04250
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Entry
Asphe3_04250 CDS
T01435
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module;ATP-dependent DNA ligase LigD ligase module;ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
apn
Pseudarthrobacter phenanthrenivorans
Pathway
apn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
apn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Asphe3_04250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apn03400
]
Asphe3_04250
Enzymes [BR:
apn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Asphe3_04250
DNA repair and recombination proteins [BR:
apn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Asphe3_04250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ADX71640
UniProt:
F0M9G3
LinkDB
All DBs
Position
complement(447302..449830)
Genome browser
AA seq
842 aa
AA seq
DB search
MTLTNLDKVIYPETGTTKADVLAYYAAVGHVLIPAAANRPATRKRWVNGVGTADKPGEVF
FQKNLEDSAPGWLPRAAITHKDRTIYYPMVNDPATLAWFGQINSLEIHVPQWQVDSHGNQ
LNPDRLVLDLDPGEGAGIEECVEVALLARSILEDVGLDPVPVTSGSKGIHLYAALDRSQT
SDQISAFARELARALESDHPDLAVSDMKKTLRKGKVLVDWSQNNAAKTTIVPYSLRGRPT
PMVAAPRTWEEIGSPGLTHLDYHEVMRRVREGIDPFAAVVRASGHSADDVAAHREDSHDG
NPRLAKYRSMRDPQATPEPFSGAAGSGDAFVIQEHHASRLHFDLRLEHEGVLVSWALPKG
VPESSGKNHLAVQTEDHPMDYLTFQGTIPKGEYGAGEMTIWDHGTYDLHKWINGKEVIVT
LKGSEGGGLGGTRKFALIHTGRGQGKESEGQWLIHLMDPEHRGGRRRHASPRGEQEEAGQ
PEAAGEPLQDEAPKNPVTTKTAPAKTATTADDSSAVAAAGAAPSPEDYRPMMATSGDAAD
LQGSNWQFELKWDGVRAIVLGDGGAVRIFSRNGIDVSRTYPEFTDRSCWPERPFVADGEI
VAVGPAGRPDFGLLQGRMKLTRPADVERARKAIPVQLMLFDLLHDDGTDLRRLPLAKRRQ
RLEDFFTPAGCPAQLSPVLEEQVEDILDSARELGLEGVMAKRTDSRYVSGQRTRTWIKLK
VEQTQEVVVGGWRPGKGGREDTVGSLLVGIPDGKKLQYAGRVGSGFSGRELAELRQTVDR
LARKTSPFLDVPRPDAADAHWVAPELVGEVTYSEWTGTGRLRHPVWRGWRLDKDPAEVVR
EG
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
ttgaccctcaccaacctggacaaagtgatctacccggagaccggaaccaccaaggccgat
gtcctggcctactacgcggcagtgggacacgtcctgatcccggcggcggccaaccggccg
gccacgaggaagcgctgggtgaacggggttgggacggcagacaaacccggagaggtgttc
ttccagaagaacctcgaggactccgcgcccggctggctcccccgggcagccatcacgcac
aaagaccgcaccatctactaccccatggtcaacgatcccgccacgctagcctggttcggc
cagatcaactccctggaaatccacgtgccgcagtggcaggtggattcccacggcaaccag
ctgaaccctgaccggctggtcctggacctggatcccggcgagggcgcgggaatcgaggaa
tgcgtggaggtggcgctcctggcccgctcaatccttgaggatgttggcctggatcccgtc
cccgtgaccagcggcagcaaaggcatccacctttacgccgccctggaccggagccagacc
tcggaccagatctccgccttcgcccgtgagctcgcccgcgccctcgagtcggaccatccc
gacctcgccgtcagcgacatgaaaaagaccctccgcaagggaaaagtcctggtggactgg
agccagaacaacgcagccaagaccaccatcgtcccgtactccctgcgcggccgccccacc
cccatggtggctgcgccccggacttgggaggagatcggttcccccggcctcacccacctg
gactatcacgaggtcatgcggcgggtgagggagggcattgacccgtttgccgccgtcgtc
cgtgcgtcgggacattctgccgacgacgtggcggcacaccgggaagacagccacgacggc
aacccccgcctggccaagtaccgttccatgcgtgatccccaagccaccccggagcccttc
agcggcgctgccggcagcggggacgcattcgtaatccaggagcaccatgccagccgcctc
cactttgacctgcggctggagcacgaaggcgtcctggtgtcctgggccctgcccaagggc
gtcccggagtccagcggaaagaaccacctggccgtgcagaccgaggaccacccgatggac
tacctcaccttccaggggacgatccccaaaggggaatatggtgccggcgagatgaccatc
tgggatcacggcacctatgacctgcacaagtggatcaacggcaaggaggtcatcgttacc
ctgaaggggtccgagggcggcggcctgggcggcacccggaaattcgccctcatccacacc
ggccgcggacagggcaaggaatctgaagggcaatggctcatccacctcatggacccggag
catcgtggcggcaggcggaggcacgcgtccccgcggggggagcaggaggaagcggggcag
ccggaggcggccggggagccgctgcaggacgaggcgccgaagaacccggtgacgacgaaa
acagcgccggcaaagacggcaacgacggcggatgactcctctgcagtggcagcggcgggc
gcggcgccctccccggaggactaccggcccatgatggcaacctccggggacgcagccgac
ctacagggcagcaactggcagtttgaactcaagtgggacggagtccgcgccatcgtcctg
ggtgacggcggcgcagtacggatcttcagccgcaacggcatcgacgtgtccaggacctac
ccggagttcacggaccggagctgctggccggagcggccgttcgtggcggacggcgagatc
gtcgccgtcggacctgcaggacggcctgacttcggcctcctccagggcaggatgaagctc
acccggccggccgacgtcgaacgggcccggaaagccatccccgtgcagctgatgctcttc
gacctcctgcacgacgacggcacggaccttcggaggctgcctctcgcaaagcgccggcaa
cggctggaggacttctttacccctgcgggctgcccggcccagctttcccccgtcctggag
gagcaggtggaggacatcctggacagcgcccgggaacttgggctggaaggggtgatggcc
aagcgcacggacagccgctacgtgagcggccagcggacccggacctggatcaagctgaag
gtggagcagacacaggaggtggtggtgggcggctggcggccgggcaagggcggccgggag
gacaccgtgggatcactgctggtgggcatcccggacggaaagaagctgcagtacgcgggc
cgggtggggagcggcttcagcggccgggagctcgccgagctgcggcagacggtggaccgc
ctggcccggaagacgtcgccgttcctggacgtcccgcggccggatgccgcggacgcccac
tgggtagcgccggaactggtgggcgaggtgacctacagcgagtggaccggaacggggcgg
ttgcgacacccggtgtggcgggggtggcggctggacaaggacccggcagaggtggtccgg
gagggctga
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