Pseudarthrobacter phenanthrenivorans: Asphe3_12560
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Entry
Asphe3_12560 CDS
T01435
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apn
Pseudarthrobacter phenanthrenivorans
Pathway
apn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Asphe3_12560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apn03400
]
Asphe3_12560
Enzymes [BR:
apn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Asphe3_12560
DNA repair and recombination proteins [BR:
apn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Asphe3_12560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ADX72433
UniProt:
F0M5Q3
LinkDB
All DBs
Position
1328487..1332152
Genome browser
AA seq
1221 aa
AA seq
DB search
MSLPGPSHHGPSLDGLRRALAADQTFARVRAEAARGFAVRGQDYQISAPAGLRAVLLAEM
ADGIAAASAGEGPDGGGSGVVLAVTATGREAEDLAAALRAYLPADCVAEFPSWETLPHER
LSPRSDTVGRRLSVLRRLAHPESSAAGPLRVVVAPVRAVVQPVVAGLGELVPVTLKVGQE
KPFGDVVRSLADAAYARVDMVTHRGEFAVRGGIIDVFPPTEDHPIRVEFFGDEVDQMRWF
AVADQRSLSSPGLHHPTELHAPPCREILITPSVMSRAATLKSQLPAAADMLEKIAGGIAV
EGMESLAPVLVDSMVPFVEQLPAGSISVIIEPEKVRTRAHDLAATNEEFLEAAWSTASDG
GAAPLDLSSQATAALHSASFRSLTETRTSSLEHGVSWWSITSLAQDEELLPDIDVLNLHA
REPRGYQGDVAEMMDFIGSHVRDQWRIVVATEGPGPAQRLAELFHENDIPCARVDSLDHE
PQAGIIEVTTAVVGRGFVLDGLKLGLLTEADLLGRTSAGSTKDMRRMPSKRRNAVDPLQL
VAGDHVVHEQHGIGKFVELIQRKVAGGGDGVREYLVLEYAPSKRGAPGDRLFVPTDQLDQ
VTRYVGGDTPVLSKMGGADWASTKSKARKAVKEIAGELIRLYSARMASRGHAFGPDTPWQ
RELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGK
QVAVLVPTTLLAQQHYETFTERFSGFPLRVKPLSRFQASKEAKETAEGVKNGTVDVVIGT
HRLLSKDFEFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGI
RETSTLATPPEERHPVLTYVGPYTDKQTSAAIRRELMREGQVFFVHNRVSTIERTAAKIR
ELVPEARVEVAHGKMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADK
YGLSQLHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQLAMKDL
EIRGAGNLLGGEQSGHIQGVGFDLYIRLVGEAVADYRGEAEEKAAEMKIELPVNAHLPHD
YVPGERLRLEAYRKLASALTNEAIDEVLAELVDRYGEPPLPARNLVDVARFRVGAREAGL
SDVALQGNFIKFSPAQLPESKIMRLTRMYPGSQSKPALDAVLIPKPKTARIGGRDLQDAE
ILEWANGVIRNIFSDAPLAVS
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgagccttcccggcccgtcccaccacggcccgtcgctggacggtctgcgccgtgcactc
gccgcagaccagaccttcgcgcgcgtgcgcgcagaggctgcccgcgggttcgcggtccgg
ggccaggactaccagatcagcgcacccgccgggctgcgcgcggtactcctcgccgaaatg
gcggacgggatagccgctgcctccgcaggggaagggcccgacggcggagggtccggcgtc
gtgctggccgtcaccgccacgggacgcgaggctgaggacctggccgcggcattgcgcgcc
taccttcccgccgactgcgttgcggagtttcccagttgggagaccctgccgcacgagcgc
ctctcgccccgttcggataccgtgggccgccgcctgtcggtgctgcgccggctggcgcac
ccggaaagctccgcggcgggtcccctccgtgtggtggtggctcccgtccgcgccgtggtc
cagccggtggtggccggcctgggcgagctggtcccggtcaccctgaaagtgggtcaggag
aaacctttcggcgacgtggtccgtagcttggccgacgccgcatacgcccgggtggacatg
gtgacccaccgcggcgagttcgcagtccgcggcggcatcatcgacgtcttcccgcctacg
gaggaccaccccatccgggtcgagttcttcggcgatgaggtggaccagatgcgctggttc
gcggtagcagaccagcgctcgctgtcctcgcccggccttcaccatcccaccgaactgcat
gccccgccgtgccgcgagatcctcatcaccccgtccgtgatgtcccgcgccgccacgctc
aagtcccaacttccggccgcggctgacatgctggagaaaatcgccggcggcatcgccgtg
gagggcatggaatccctggcaccggtgctggtggactccatggtcccgttcgtggaacag
cttcctgccgggtctatttccgtcattatcgagccggagaaagtccgcacccgggcccac
gatctcgcggccaccaacgaggagttccttgaggcggcctggtccacagcttccgacggc
ggtgcggccccgctcgacctgagctcgcaggcaactgccgccctccactccgccagcttc
cgctccctgacggagacccggacctcctcgctggagcatggcgtgtcctggtggtccatc
acctcccttgcccaggacgaggaactgctgccggacatcgacgtcctgaacctgcacgcc
cgcgaaccacggggctaccagggtgacgtggcggaaatgatggacttcattggatcccat
gtgcgggaccaatggcggatcgtcgtcgccaccgaaggtcccgggccggcccagcgcctg
gcggagctgtttcacgaaaacgacatcccgtgtgcccgcgtggacagcctggaccacgag
ccccaggcggggatcatcgaggtgaccaccgccgtcgtcggacgcggttttgtcctggac
gggctcaaactgggcctgctcaccgaagccgacctgctgggcaggacgtccgccgggtcc
accaaggacatgcgccgcatgccctccaagcggcgcaacgcggtggacccgctgcagctc
gtggcgggcgaccatgtggtccacgagcagcacggcattggaaagttcgtggagctgatc
cagcgcaaggtagccggcggcggtgacggcgtgcgtgaatacctcgtcctggagtacgcg
ccgtccaagcggggcgccccgggggacaggctgttcgtccccacggaccagctggaccag
gtgacccgctacgtcggcggggatacccctgtgctgagcaagatgggcggtgcggactgg
gccagtaccaagtccaaggcacgcaaggccgtcaaggagatcgccggcgagctgatccgc
ctctactcggcccggatggcgtcccgggggcatgcctttgggccggacacgccctggcag
cgggaactggaggaggccttcccgtacgtggagacgccggaccagctgaccaccatcaac
gaggtcaaagccgacatggagcgggaaatccccatggaccgcctggtttccggcgacgtg
ggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtccaggacggcaag
caggtggctgtgctggtgcccaccaccctgctcgcacagcagcactacgaaacgttcacc
gagcggttctccggcttcccgctgcgcgtgaagccgctctcccggttccaggcgtccaag
gaggcgaaggaaacggcggagggcgtcaagaacggcaccgtggacgtggtgatcggcacc
caccgcctgctgtccaaggacttcgagttcaaggacctgggcctggtcatcgtggacgag
gagcagcgcttcggggtggagcacaaggaagccttgaagaaaatgcgcaccaacgtggac
gtcctcgccatgagcgccacgcccattccgcgcaccctggagatgtccctgaccggaatc
cgggaaacctccaccctggccacgccgccggaagaacgccacccggtcctgacctacgtg
ggcccgtacacggataagcagacctcagccgcgatccgccgcgagctcatgcgcgaaggg
caggtcttcttcgtccacaaccgcgtgtccaccatcgaacgcacggccgccaagatccgc
gagctggtgcccgaggcacgggtggaggtggcgcacggcaaaatgtccgagagccgcctg
gagcagatcatcgtggacttctgggagaagcgctttgacgtgctggtgtgcaccaccatc
atcgaaaccggactggacatctccaacgcgaacaccctgatcgtggacggtgcggacaaa
tacggcctgtcccagctgcaccagctccgcggacgcgtgggccgcggccgggaacgcgcc
tacgcctacttcctgtacccgtcggaaaaaccgctgggcgaggtggcgctggagcggctc
aaggccgtggccacccacaatgagctcggtgccggcatgcagctggccatgaaggacctg
gagatcaggggtgccggcaacctgctcgggggcgagcagtcagggcacatccagggtgtg
ggcttcgatttgtacatccggctggtgggcgaggcagttgctgactaccgtggtgaggcc
gaggagaaggccgccgagatgaagatcgagctgccggtcaatgcgcacctgccgcatgac
tacgtgccgggggagcggctgcggctggaggcctaccggaagctcgcctccgcccttacc
aacgaggccatcgacgaggtgctggccgagctggtggaccgctacggcgagccgccgctg
cccgcccgcaacctggtggacgtggcgcgcttccgggtgggggctcgggaagccggcctg
tccgacgtagcgctgcagggcaacttcatcaagttctcgcccgcccagctgccggagtcc
aagatcatgcggctgacgcggatgtaccctggttcccagtccaagcctgccctcgacgca
gtgctgattcccaagccgaagacggcaaggatcggcgggcgggacctgcaggacgcggaa
atcctggagtgggccaacggcgtcatccggaacattttctcggacgcgccattggcggtg
agctag
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