Pseudarthrobacter phenanthrenivorans: Asphe3_15210
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Entry
Asphe3_15210 CDS
T01435
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
apn
Pseudarthrobacter phenanthrenivorans
Pathway
apn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
apn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Asphe3_15210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apn03400
]
Asphe3_15210
Enzymes [BR:
apn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Asphe3_15210
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Asphe3_15210
DNA repair and recombination proteins [BR:
apn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Asphe3_15210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
zf-TFIIB
Ribosomal_S13
OrfB_Zn_ribbon
Cys_rich_KTR
Zn-ribbon_8
zf-RRN7
Motif
Other DBs
NCBI-ProteinID:
ADX72690
UniProt:
F0M8V5
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All DBs
Position
complement(1623325..1624194)
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AA seq
289 aa
AA seq
DB search
MPELPEVAGLAGFLDEHLRGSTVSKVQIVSFAVLKTADPPFSALEGRTVTGVRRFGKFIS
IDTDGISFVFHLARAGWIRFTDSPTDAQLKMGKGHIAARLAFTGPGGPRGFDLTEAGTKK
SLAVYVVRDPQDVPGIATLGPDPFAEAFDAGMLAEILAGSSQQIKGLLRNQGVIAGIGNA
YSDEILHAARISPFATAKSLDRETVQVLYNAIHDVLGTALAEAAGKPPKDLKDVKRSHMR
VHARTGQPCPVCGDTVREVSFADTALQYCPTCQTKGKILADRRTSKFLK
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctgcccgaagtcgcaggcctggcagggttcctggacgagcacctgcgggga
agcacggtgtcaaaagtgcagatcgtttccttcgctgtgctcaagaccgccgacccgccg
ttcagtgcccttgagggcaggaccgtcacgggcgtgcggcgctttggcaagttcatcagc
atcgatacggacggaatttcgttcgtgttccatctggcccgggcaggctggatccggttc
acggactcccccactgacgcgcaattgaaaatgggcaaaggccacatcgccgcgcgcctt
gccttcacgggccccggcggaccccgcggcttcgacctgaccgaggcgggcaccaagaag
agcctcgcagtctacgtggtgcgcgatccgcaggacgtgcccggcatcgccaccctgggg
ccggacccgttcgcagaggcgttcgacgccggcatgctggctgaaatcctggcaggcagt
tcccagcaaatcaagggactcctgaggaaccagggcgtgatcgccgggatcggcaacgcc
tacagtgacgagatcctgcacgcggcacggatctccccctttgccaccgccaaatccctg
gaccgggaaacggtgcaggtgctgtacaacgccatccacgacgtcctgggcactgccctg
gcggaagcggctggcaagccgccgaaggacctcaaagacgtgaaacgaagccatatgcgc
gtccacgccaggacgggccagccctgcccggtctgcggcgacaccgtccgggaagtttcg
tttgccgatactgccctgcagtactgccccacctgccagaccaagggcaagatcctggcc
gaccgcaggacctcgaagttcctcaagtag
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