Pseudarthrobacter phenanthrenivorans: Asphe3_19100
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Entry
Asphe3_19100 CDS
T01435
Name
(GenBank) superfamily II RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
apn
Pseudarthrobacter phenanthrenivorans
Brite
KEGG Orthology (KO) [BR:
apn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apn03019
]
Asphe3_19100
Enzymes [BR:
apn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Asphe3_19100
Messenger RNA biogenesis [BR:
apn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Asphe3_19100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
MTR4-like_stalk
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ADX73065
UniProt:
F0M1C6
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All DBs
Position
2050938..2053871
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AA seq
977 aa
AA seq
DB search
MSSNTGPTSAGPSAAGSQNFEELSPAERYRASAERRAEAATYLGAFIRTLDFELDDFQRQ
SCRSLQEGRGVLVAAPTGAGKTIVGEFAIYLALQRGLKAFYTTPIKALSNQKFTELSEKY
GADKVGLLTGDTSINGDAPVVVMTTEVLRNMLYADSATLDDLGYVVMDEVHYLADRFRGA
VWEEVIIHLPSEVQVVSLSATVSNAEEFGAWLDTVRGDTDIIVSEHRPVPLWQHVMVGRQ
IMDLFAGETTFDEIAPPVEEGETQPVSSAESSKGRGFEVNPDLLAVARSESQQSFRGRPG
GPGGRGQRSRRGNDRPGRLGDDRGIRPASRPQVIASLDRMDLLPAITFIFSRAGCDAAVA
QCVGSGLWLTTEKEQRIIAQRVDEAGHDIPPDDLDVLGFWTWRDGLIRGFAAHHAGMLPT
FKEVVEKLFADGLVKAVFATETLALGVNMPARSVVLEKLDKFNGEAHVDITAGEYTQLTG
RAGRRGIDVEGHAVVLWQPGTDPTAVAGLASRRTYPLNSSFRPTYNMSINLLAQFGRARA
REILESSFAQFQADRSVVGLARQVRSREESLAGYAKSMTCHLGDFTEYARLRRELSDAEN
ATSKTRSRARKSLNDDSLARLLPGDVVDVPGGRAPGPAIVLSSDHSSREPRPAVLTLDNQ
LRRIGTDDLEGPIAPVTRIRIPKSFNAKVPKSRRDLASSARNALRENRPPAPGNNRNHDF
GLATTLPNQEKRIADLRRALRAHPCHGCSEREDHARWSERWWKLRRETDGLVRQIQGRTN
TIAKTFDRVCDVLSAYGYLEPAADGRLSISPDGQRLRRIYGEKDLLISQSLRLGAFDDLD
AAEVAALASVLVYQAKREDRGLRPRMPSVSLETSVDIVVREWSALEDVEEENKLPLTGEP
ELGLIWPVYKWARGRHLQDVLSGTDLAAGDFVRWVKQVVDLLDQLAKIPGLDPRLARLCT
EAIKLIRRGVVAYSSVL
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccaacaccgggcctacttccgccggaccgtccgcggccggctcccaaaacttc
gaagaactctcaccggccgagcggtaccgtgccagtgccgaacgcagggcggaagcagcc
acctacctgggcgccttcatccggaccctcgacttcgagctcgacgacttccagcggcag
tcctgccgttccctgcaggagggcaggggcgtgctggtggcggcgcccaccggggcaggc
aaaaccatcgtgggtgagtttgccatctacctcgccctgcagcggggcctgaaggccttc
tacaccacacccatcaaggccctcagcaaccagaagttcaccgaactctccgagaagtac
ggtgcggacaaagtaggcctgctcaccggcgacacaagcatcaacggtgacgcgcccgtc
gtcgtgatgaccaccgaagtcctccggaacatgctgtacgcggactccgcgaccctggac
gatctgggctacgtggtcatggacgaggtccactatctggccgaccgcttccgcggcgca
gtctgggaggaagtcatcatccacctgcccagtgaggtgcaggtggtctcgctcagcgcc
accgtctccaacgccgaggagttcggcgcgtggctggacaccgtccgcggcgacacggac
atcattgtctccgagcaccggccggtgcccctctggcagcacgtgatggtggggcggcag
atcatggatctgttcgccggtgaaaccaccttcgacgaaatcgcccctcctgtagaggag
ggtgagacgcaaccggtctcgtccgcggagagctccaagggacgcggcttcgaggtcaat
cccgacctcctggcagtggcgcgcagtgaaagccagcaaagcttccgcgggcgtccgggc
ggacctggcggacggggccagcgcagcaggcgcggcaatgaccgccccggccgcctcggc
gacgaccgggggatccgtccggccagccggccacaggtcattgcgagcctggaccgcatg
gacctgctgcccgccatcaccttcatcttttcccgggcgggctgtgacgctgcggttgcg
cagtgcgtgggatccgggctgtggctcaccacggagaaggagcagcgcatcatcgcccag
cgcgtggacgaagccgggcacgacattccgccggacgacctggacgtcctggggttctgg
acttggcgggacggactgatccgaggctttgcggcacatcacgccggcatgctgcccacc
ttcaaggaagtggtggaaaagctcttcgcagacggcctggtcaaggcggtttttgccacg
gagaccctggcgctcggggtcaatatgccggcccggtcggtggtgctggagaagctggac
aagttcaacggtgaagcccacgtggacatcacggcaggggagtacacccagctgacggga
cgcgccggccgccgcgggatcgacgtcgaaggccacgccgtggtgctctggcagccgggc
acggacccgacggcggtggcaggcctggcctccaggcgcacctacccgttgaactcgagc
ttccggcccacgtacaacatgagcatcaacctcctggcccagttcggccgggccagggcg
cgcgagatccttgaatcatcctttgcccagttccaggcggaccgttccgtggtggggctc
gccaggcaggtgcgcagccgggaagagtcgctggccgggtacgccaagtcgatgacgtgc
caccttggtgacttcaccgagtacgcacggctgaggcgggagctctccgacgcggaaaat
gccacgtccaagaccaggtcccgtgcgcgcaagtccctgaacgacgattcactggcgcgg
cttctcccaggagacgtggtggacgtccccggcggccgcgcgccgggccctgcgatcgtc
ctcagctctgaccacagcagccgtgagccgcggcctgccgtcctcaccctggacaaccag
ctgcggaggatcggaacggatgacctggaaggccccattgcgcccgtaacgcgtatccgc
attcccaagtccttcaacgcaaaggtccccaagtcccggcgcgacctcgcctcgtcggca
cggaacgcgctgcgggaaaaccggccgcccgcccccgggaacaaccgcaaccatgacttc
ggcctcgccaccaccctgccgaaccaggagaagcgcatcgcggacctgcgccgtgccctc
cgtgcacacccctgccacgggtgcagtgaacgggaggaccatgctcgctggtctgagcgc
tggtggaagctgcggcgcgagacggacggactggtccggcagatccaggggcgtacgaat
acgatcgccaagaccttcgaccgggtgtgcgatgtcctgtccgcctacggttacctggaa
ccggcggcagacggccgcctgtccatcagtcctgacgggcagcggcttcgccggatctac
ggtgaaaaagacctgctgatctcccagtcgttgcggctgggcgcgtttgatgacctcgat
gctgccgaagttgcggcgctggccagcgtgctggtgtaccaggccaaacgtgaggaccgc
gggctgcgtcccaggatgcccagtgtttccctggaaacgtcggtggatatcgtcgtccgc
gagtggtccgccctggaggacgtggaggaggaaaacaagcttccgctgaccggcgaacct
gagctggggctcatctggcctgtctacaagtgggcacgcggccgccacctccaggatgtc
ctcagcggcacggacctggctgccggagacttcgtgcgctgggtgaagcaggtggtggac
ctgctggaccagctcgcaaagattcccggacttgatccccgcctggccaggctctgcacc
gaggccatcaagctgatccgccgtggtgtcgtggcttattcctcggtcctctag
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