Ancylobacter polymorphus: K9D25_00805
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Entry
K9D25_00805 CDS
T08152
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
apol
Ancylobacter polymorphus
Pathway
apol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
apol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K9D25_00805 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apol03400
]
K9D25_00805 (ligD)
Enzymes [BR:
apol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K9D25_00805 (ligD)
DNA repair and recombination proteins [BR:
apol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K9D25_00805 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
SPOR
Motif
Other DBs
NCBI-ProteinID:
UOK71299
UniProt:
A0A9E7A5V5
LinkDB
All DBs
Position
complement(190358..192892)
Genome browser
AA seq
844 aa
AA seq
DB search
MALEVYRRKRDFTRTQEPQGSESAAAGHAYLIQKHAARRLHYDLRLELDGVLKSWAVTKG
PSLVPGEKRLAVHVEDHPLDYGSFEGTIPKGEYGGGTVMLWDTGSWEPIGDPARGYNKGH
LEFALHGEKLSGRWHLVRMGKRRGEKADNWLLIKAEDAAARPEGAPDILEERPESVKTGR
SMDAIAKGETVAADPPAAPAPTKARAARTRTPAAKKAPASQPLPAFIEPQLATLVSKAPV
GKSWIHEIKFDGYRLQARIDNSAKGKGRVKLLTRSGLDWTPRFGPALVAALETLPVEDAL
IDGELVVENSAGVSNFSLLQKDLAEGSSDRFIYYAFDLLHLDGRDLTGAPLRRRKEMLEQ
LLAKAGDGLRYSEHLAEDGDAMLRHACRLSLEGLVSKRADAPYRPGRGKEWVKSKCAFRQ
EFVIGGFTPSTAQKNAIGSLVLGVYQAGNLTSVGRVGTGFSRELARDLHARLAKIARDRS
PFGKTLTAEERRGVTFVAPELVAEVEFRGWTGDQHLRHAAFRGLREDKPAREIVRETPVE
GEAMAAKSDAPRSRVKLTHPDRIYWPAEGITKQGLADYYAEIWRFIAPFVVARPLALLRC
PDGIEGQAFFQKHSWRGMNKAIKVTKDKDGEELLHIDDLDGLIALVQSGALEIHPWGAPL
IDIERPDQLIFDLDPGEAVGWDGVVAGAREIRARLEAQGLPAFVKTSGGKGLHVVVPLEP
KATWETAKPFAKALADAMAADDPDHYIAVATKARRKGRIFIDYLRNGRGATAVAAYCPRA
RPGAGVSMPVAWDELDALTGGAQFTLTEAPARLANLAADPWADFRAAAVPLPTARTGKGQ
GRKA
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggaagtctaccgccgcaagcgcgacttcacccgcacgcaggagccgcagggc
agcgaaagcgccgctgccggccatgcctatctcatccagaaacatgccgcccggcgcctg
cattacgaccttcggctggaattggacggcgtgctcaagagctgggccgttaccaagggg
ccgagcctggtgccgggcgagaagcgcctcgccgtgcatgtggaagaccatccgctcgac
tatggcagcttcgagggcacgatccccaagggcgaatatggcggcggcaccgtcatgctg
tgggataccggcagctgggagccgatcggcgatcccgcgcgcggctacaacaagggtcat
ctcgaattcgcgctgcacggcgagaagctcagcggccgctggcatctggtgcgaatgggc
aagcgccggggcgagaaggcggacaattggctgctcatcaaggctgaggacgcggccgcc
cggcccgaaggcgcgccggatattcttgaggaaaggccggagtcggtgaagaccggccgc
agcatggacgccatcgccaagggcgagacggtcgccgccgacccgcccgcagcgcccgcg
ccgaccaaggccagggcggcgcgaacccggacgcctgcagcgaaaaaggcgcccgcttcg
caacctttgcccgccttcatcgagccgcagctggcgacgctggtgtccaaggcgcccgtg
ggcaagagctggatccacgagatcaagttcgacggctatcggctgcaggcgcggatcgac
aacagcgccaagggcaagggccgggtgaagctgctcacgcgctccggtctcgactggacc
ccgcgtttcgggccggctctggtggcggcgctggagacgttgcccgtggaggacgcgctg
atcgacggcgaactggtggtggagaacagtgccggcgtgtcgaatttcagcctgctgcag
aaggacctcgcggaagggtcctcagaccgtttcatctattacgccttcgacctcctgcat
ctcgacggacgtgacctcactggcgcaccgctccggcgccgcaaggagatgctggaacaa
ttgctggccaaggccggggatggtctgcgctacagtgagcatctggcggaggatggcgat
gccatgctgcgccatgcttgccggctcagcctggaagggctggtgtcaaaacgggcggac
gccccctatcgccccggccgcggcaaggagtgggtgaagtcgaaatgcgccttccgccag
gagttcgtcattggcggcttcacgccttccacggcgcagaaaaatgccatcggctcgctg
gtgcttggcgtctatcaggcgggcaacctcacgtccgtcggccgggtcggcaccggcttc
tcgcgcgaactggcccgcgatcttcatgcccggctggcaaagattgcccgcgaccgcagc
cccttcggtaagacgctgacggcggaggaacggcgcggcgtcaccttcgtggcacccgaa
ctcgtcgctgaagtggagtttcgcggctggaccggcgaccagcatctgcgccacgccgct
tttcgtggcttgcgcgaggataagccggcgcgcgagatcgtccgtgagacccccgtggag
ggcgaggccatggctgcgaaaagcgacgcgccgcgttcgcgggtgaagctgacccatccc
gaccgcatctactggccggcggagggcatcaccaagcagggcctcgccgactattacgcc
gagatctggcgcttcatcgcccccttcgtcgtcgcccggccgctggcgttgctgcgctgc
ccggacggcatagaggggcaggccttcttccagaagcactcctggcgcggcatgaacaag
gcgatcaaggtcaccaaggacaaggatggcgaggagcttctgcatattgacgacctcgac
gggctgatcgccctcgttcagtccggcgcgctggaaatccacccctggggcgcgccgctt
atcgacatcgagcggccggaccagctcattttcgacctcgaccccggcgaggccgtggga
tgggacggcgtggtggctggtgcacgcgaaatccgcgcccggctggaggcgcagggcctg
ccggccttcgtcaagacctccggcggcaagggtctacatgtggtggttccgctggagccg
aaggctacctgggagaccgccaagcctttcgccaaggcgctggccgacgcgatggccgcc
gacgatcccgaccattacatcgccgtggccaccaaggcccgccgcaaggggcgcatcttc
atagactacctgcgcaacgggcgcggcgccacggcggtagcggcctattgcccgcgcgcg
cggcccggcgccggcgtttccatgccggtggcgtgggacgaactcgacgcactcaccggc
ggcgcgcagttcaccctcaccgaggcgccggcccggctcgccaatctcgctgccgacccc
tgggcggatttccgcgccgctgccgtacctcttcccaccgcccgcaccggcaagggccag
gggaggaaagcctga
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