KEGG   Ancylobacter polymorphus: K9D25_00805
Entry
K9D25_00805       CDS       T08152                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
apol  Ancylobacter polymorphus
Pathway
apol03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:apol00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    K9D25_00805 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:apol03400]
    K9D25_00805 (ligD)
Enzymes [BR:apol01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     K9D25_00805 (ligD)
DNA repair and recombination proteins [BR:apol03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     K9D25_00805 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme SPOR
Other DBs
NCBI-ProteinID: UOK71299
UniProt: A0A9E7A5V5
LinkDB
Position
complement(190358..192892)
AA seq 844 aa
MALEVYRRKRDFTRTQEPQGSESAAAGHAYLIQKHAARRLHYDLRLELDGVLKSWAVTKG
PSLVPGEKRLAVHVEDHPLDYGSFEGTIPKGEYGGGTVMLWDTGSWEPIGDPARGYNKGH
LEFALHGEKLSGRWHLVRMGKRRGEKADNWLLIKAEDAAARPEGAPDILEERPESVKTGR
SMDAIAKGETVAADPPAAPAPTKARAARTRTPAAKKAPASQPLPAFIEPQLATLVSKAPV
GKSWIHEIKFDGYRLQARIDNSAKGKGRVKLLTRSGLDWTPRFGPALVAALETLPVEDAL
IDGELVVENSAGVSNFSLLQKDLAEGSSDRFIYYAFDLLHLDGRDLTGAPLRRRKEMLEQ
LLAKAGDGLRYSEHLAEDGDAMLRHACRLSLEGLVSKRADAPYRPGRGKEWVKSKCAFRQ
EFVIGGFTPSTAQKNAIGSLVLGVYQAGNLTSVGRVGTGFSRELARDLHARLAKIARDRS
PFGKTLTAEERRGVTFVAPELVAEVEFRGWTGDQHLRHAAFRGLREDKPAREIVRETPVE
GEAMAAKSDAPRSRVKLTHPDRIYWPAEGITKQGLADYYAEIWRFIAPFVVARPLALLRC
PDGIEGQAFFQKHSWRGMNKAIKVTKDKDGEELLHIDDLDGLIALVQSGALEIHPWGAPL
IDIERPDQLIFDLDPGEAVGWDGVVAGAREIRARLEAQGLPAFVKTSGGKGLHVVVPLEP
KATWETAKPFAKALADAMAADDPDHYIAVATKARRKGRIFIDYLRNGRGATAVAAYCPRA
RPGAGVSMPVAWDELDALTGGAQFTLTEAPARLANLAADPWADFRAAAVPLPTARTGKGQ
GRKA
NT seq 2535 nt   +upstreamnt  +downstreamnt
atggcgctggaagtctaccgccgcaagcgcgacttcacccgcacgcaggagccgcagggc
agcgaaagcgccgctgccggccatgcctatctcatccagaaacatgccgcccggcgcctg
cattacgaccttcggctggaattggacggcgtgctcaagagctgggccgttaccaagggg
ccgagcctggtgccgggcgagaagcgcctcgccgtgcatgtggaagaccatccgctcgac
tatggcagcttcgagggcacgatccccaagggcgaatatggcggcggcaccgtcatgctg
tgggataccggcagctgggagccgatcggcgatcccgcgcgcggctacaacaagggtcat
ctcgaattcgcgctgcacggcgagaagctcagcggccgctggcatctggtgcgaatgggc
aagcgccggggcgagaaggcggacaattggctgctcatcaaggctgaggacgcggccgcc
cggcccgaaggcgcgccggatattcttgaggaaaggccggagtcggtgaagaccggccgc
agcatggacgccatcgccaagggcgagacggtcgccgccgacccgcccgcagcgcccgcg
ccgaccaaggccagggcggcgcgaacccggacgcctgcagcgaaaaaggcgcccgcttcg
caacctttgcccgccttcatcgagccgcagctggcgacgctggtgtccaaggcgcccgtg
ggcaagagctggatccacgagatcaagttcgacggctatcggctgcaggcgcggatcgac
aacagcgccaagggcaagggccgggtgaagctgctcacgcgctccggtctcgactggacc
ccgcgtttcgggccggctctggtggcggcgctggagacgttgcccgtggaggacgcgctg
atcgacggcgaactggtggtggagaacagtgccggcgtgtcgaatttcagcctgctgcag
aaggacctcgcggaagggtcctcagaccgtttcatctattacgccttcgacctcctgcat
ctcgacggacgtgacctcactggcgcaccgctccggcgccgcaaggagatgctggaacaa
ttgctggccaaggccggggatggtctgcgctacagtgagcatctggcggaggatggcgat
gccatgctgcgccatgcttgccggctcagcctggaagggctggtgtcaaaacgggcggac
gccccctatcgccccggccgcggcaaggagtgggtgaagtcgaaatgcgccttccgccag
gagttcgtcattggcggcttcacgccttccacggcgcagaaaaatgccatcggctcgctg
gtgcttggcgtctatcaggcgggcaacctcacgtccgtcggccgggtcggcaccggcttc
tcgcgcgaactggcccgcgatcttcatgcccggctggcaaagattgcccgcgaccgcagc
cccttcggtaagacgctgacggcggaggaacggcgcggcgtcaccttcgtggcacccgaa
ctcgtcgctgaagtggagtttcgcggctggaccggcgaccagcatctgcgccacgccgct
tttcgtggcttgcgcgaggataagccggcgcgcgagatcgtccgtgagacccccgtggag
ggcgaggccatggctgcgaaaagcgacgcgccgcgttcgcgggtgaagctgacccatccc
gaccgcatctactggccggcggagggcatcaccaagcagggcctcgccgactattacgcc
gagatctggcgcttcatcgcccccttcgtcgtcgcccggccgctggcgttgctgcgctgc
ccggacggcatagaggggcaggccttcttccagaagcactcctggcgcggcatgaacaag
gcgatcaaggtcaccaaggacaaggatggcgaggagcttctgcatattgacgacctcgac
gggctgatcgccctcgttcagtccggcgcgctggaaatccacccctggggcgcgccgctt
atcgacatcgagcggccggaccagctcattttcgacctcgaccccggcgaggccgtggga
tgggacggcgtggtggctggtgcacgcgaaatccgcgcccggctggaggcgcagggcctg
ccggccttcgtcaagacctccggcggcaagggtctacatgtggtggttccgctggagccg
aaggctacctgggagaccgccaagcctttcgccaaggcgctggccgacgcgatggccgcc
gacgatcccgaccattacatcgccgtggccaccaaggcccgccgcaaggggcgcatcttc
atagactacctgcgcaacgggcgcggcgccacggcggtagcggcctattgcccgcgcgcg
cggcccggcgccggcgtttccatgccggtggcgtgggacgaactcgacgcactcaccggc
ggcgcgcagttcaccctcaccgaggcgccggcccggctcgccaatctcgctgccgacccc
tgggcggatttccgcgccgctgccgtacctcttcccaccgcccgcaccggcaagggccag
gggaggaaagcctga

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