KEGG   Acetobacter pasteurianus IFO 3283-22: APA22_17480
Entry
APA22_17480       CDS       T01815                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
apq  Acetobacter pasteurianus IFO 3283-22
Pathway
apq02024  Quorum sensing
apq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:apq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    APA22_17480 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    APA22_17480 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:apq03019]
    APA22_17480 (hfq)
   03036 Chromosome and associated proteins [BR:apq03036]
    APA22_17480 (hfq)
Messenger RNA biogenesis [BR:apq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     APA22_17480 (hfq)
Chromosome and associated proteins [BR:apq03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    APA22_17480 (hfq)
SSDB
Motif
Pfam: Hfq DUF5594
Other DBs
NCBI-ProteinID: BAI09024
LinkDB
Position
complement(1890846..1891130)
AA seq 94 aa
MEKESAYNVQDAFLNQIRRSRAAVTVFLVNGVKLQGFITWFDDEVVLLRRDEQTQLIYKH
AISTVMPSIPVNISDSNTADAQADRDLSLGDEFL
NT seq 285 nt   +upstreamnt  +downstreamnt
gtggaaaaagagagtgcatataacgtgcaggatgcgttcctgaaccagatccggcgctca
cgcgcggctgttactgtgtttctggtgaacggcgttaagttacagggatttattacatgg
tttgatgatgaggttgttcttttacggcgtgatgaacaaacccagcttatctacaagcat
gccatcagcacggtaatgcccagcattcctgtcaatatttccgattccaacactgccgat
gcgcaggcagacagggacctttctcttggcgacgagtttctctga

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