Ahaetulla prasina (Asian vine snake): 131199999
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Entry
131199999 CDS
T09329
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
apri
Ahaetulla prasina (Asian vine snake)
Pathway
apri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
apri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131199999 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apri03021
]
131199999 (PCF11)
03019 Messenger RNA biogenesis [BR:
apri03019
]
131199999 (PCF11)
Transcription machinery [BR:
apri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131199999 (PCF11)
Messenger RNA biogenesis [BR:
apri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131199999 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
CFIA_Pcf11
VHS
Motif
Other DBs
NCBI-GeneID:
131199999
NCBI-ProteinID:
XP_058042278
LinkDB
All DBs
Position
5:8842467..8867662
Genome browser
AA seq
1779 aa
AA seq
DB search
MSGGGAATTASEGAASGGGGGTTTTGGGNSEDACRDYQSSLEDLTFNSKPHINMLTILAE
ENVPFAKDIVSLIEAQIAKAPSNEKLPVMYLMDSIVKNVGREYLAAFTKNLVSTFVNVFE
KVDENTRKSLFKLRSTWDEIFPLKILYALDVRVNSVDPAWPVKPLPPNVNTSSIHVNPKF
LSKSPEEPAAPSSTVCSLPVSCSAVSSTPIVPEIQKNLTQEQLIRQQLLAKQKQLLELQQ
KKLELELEQTKAQLAVSLSVQQSGSNLGQAPLKQHVPQPPHMPVKAPHPACLPPEKNHLS
PLQDAKIANRDPRLNRTSQHSSHLKDQTHRKDFLMNAVSQPDPKTSKTPQSEKQNATKPE
KLKQNEKLQKKEFDQMDAKSKLPSPLQNKLLHPKETRNQECENPRVSEINKRDPRLKKHL
EKPDGKDDDPKEKRRCMERKDKEEHRSVGGRNKLINGIVQKQDPNTEESEKQSGKPGRSS
TRKRSRSPRSRSPSAHSPKRRERRSPKRRLRSLSPTGSKIGKSRQSGPKQSHLEDFGSGA
RDDRSSNKRNIKQEARDSRRPKKIHEDRPQEGMNQHSSKSNSEPKENLENWQGSKSSKRW
KSGWEENKNPQLTEEHQGLGKSPHQRHRDTWATNKGVPSPRTPKQQHRLSVDANLQIPKE
LTLANKREILKKASESLTSGEITQDEFLVLCHKIRQLFQYQEGKHRSEWDNTPGEKGMSK
KKPLLSESDLIYHEHKAKLKRTQVQHSFPRLNMIDAEEILDYHLPDGFLSGMDCDQTKNK
CSAQFGERSRRHSPVGGSRPYSDNSPHDVRRRHDEPSASKGLREEQRINDIFKRARYEDT
EKPFTDLPGSRFGASDGKQRFSSLIEDRAHFEGSPRHPGIRASGDGQSGHFEGPANAAPR
IEGPQAQTNLRFEGSLGQPTAQFEGPQGQSGGKGSHMFDGPPAQLGSGPLRFDGPSGQVS
TGSTIRFEGPIGQPGGGLRFEGPSGQSVGGMRFEGTHGQPSGGMRFEGPHSHTTASIRFE
GPHGQSSAGMRFEGMHDQPSNNIRFDGQPSGGLRFEGPHGQPSNAIRFEGPHDRPVGPHG
PPGSGMRFEGPHGQPVGPHGQQGSGLRLEAPHMQPVGSLGQPGSNMPFDAPHGQPIGPHV
QPASGLRFEGPHGQPVGAHGQPLGSRFEGPHNQPLGPHGQPIGPHVQPASGLRFEGPHGQ
PVGAHGQPLGSRFEGPHNQPLGPHGQLGISPRFEAPSVQTGGGLRFEGPINQTRFDGCPS
RFDGQPGQPSILQRLDGLHVQPASRFEIGPAQTPPRFDGPPGQQVQPRFDTILQRFDDPQ
HPGTRYDILLGHQGPRIENVANHPGSRLETAPYGQTGPYSETPNQSPYNGASQGLQFQRP
DQIFDNPQGPNFSGPPVSAAQHFPNAINRAPGPFYDDKNLQGPQFRNFNNMTVGNVQPPQ
QVPVLPVSSGQPFSQGQPLLPVHAQNPGGFVQNQPGNIPLSYPDNHLGQLDVNELFSKLL
STGILKSLQPDSSSSQVSEVSTQPPPEEEEDDQDQNEDIPDLTNFVIEELKQRYDSVINR
LYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEE
IADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGVDESCEICQEQFEQYWDE
EEEEWHLKNAIRVEEKIYHPSCYEDYQKTSSFDSTPSPSKTPVENPLNIMLNIVKQEGQD
SCNSPKVKEEPEEKATDCTDGNIPESAEIKTEPLKVESV
NT seq
5340 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcgccgcgacgacggcgtccgaaggggccgccagcggtggcggcggc
ggcaccaccaccaccggtggcggcaacagcgaagacgcctgccgcgactaccagtcgtcg
ctggaagacctgacgttcaacagcaagccgcacatcaacatgctgaccatcctggccgag
gagaacgtgcccttcgccaaggacatcgtctcgctgatcgaggcgcaaatcgccaaggct
ccttctaatgagaaacttcctgttatgtacctaatggattccattgtcaagaatgttgga
cgagaatatcttgctgcatttactaaaaacctagtttcaacatttgttaatgtgtttgaa
aaggtggatgaaaatactaggaaaagtttgtttaaattgcgttccacgtgggatgaaatt
ttccctctgaagattctctatgctctcgatgttcgggtgaattcagttgaccctgcttgg
cctgttaagccgttaccccctaatgtgaatacttctagcatccacgtgaatcctaagttt
ttaagtaaatcgcctgaggaacctgctgcacctagctctacagtctgttctcttcctgtg
tcctgttctgctgtgtcctctactccaattgttcctgaaatacaaaagaacttaacgcaa
gagcagctgataagacaacagctgctagcaaaacaaaaacagttgttagaacttcaacag
aagaaattagaacttgaattagaacagacaaaagcacagctggctgtttccctcagtgtc
cagcaaagtggatctaatctgggccaagcacctttaaaacaacatgtgccacagccacct
cacatgccagttaaagctccccatccagcttgtctgccaccagagaaaaaccatttgtct
ccactccaggatgccaaaatagccaatagagaccctcgtcttaacagaacgagtcagcat
tcgtctcatttgaaagatcagactcataggaaggacttcctgatgaatgcagtcagtcag
cctgacccgaagactagcaaaactccacagagtgaaaagcaaaatgccacaaagccagaa
aaattaaaacagaacgagaaactgcagaagaaagaatttgatcaaatggatgcaaagtca
aagttaccctctccgttgcaaaataagctgcttcaccctaaagaaaccaggaaccaagaa
tgtgagaatccccgagtgtctgaaatcaacaagagagaccccaggttaaaaaaacatcta
gagaaaccagatggcaaagatgatgaccccaaagaaaaaaggagatgcatggagaggaaa
gacaaagaggaacatagatcagttggtggtagaaataaattaatcaatggcattgtacaa
aagcaagatcccaatacagaagagtcagagaagcagagtggaaaaccaggaaggtcaagt
actaggaaacggtcacgttctcctagatctcggtcaccatctgcacattctccaaaacga
agagagagaaggtcacctaaaagaaggcttaggagcctctctccaactggatctaagatc
gggaaatcacgacagtctgggcccaaacagtcgcatctagaggattttgggtcaggagca
cgggatgacagaagctcgaacaagaggaatatcaagcaggaggcgagagattctaggagg
ccgaagaaaatccacgaagaccgaccccaagaaggaatgaatcaacattcttccaagtca
aattcagaacccaaagaaaatctggagaattggcaaggttccaaatcaagcaaaaggtgg
aaatctggctgggaggaaaataaaaatcctcaacttactgaagagcatcaaggacttggt
aaatcccctcatcagaggcacagggatacttgggcaactaataaaggagttccttcacct
cgcaccccaaaacagcaacatcgattaagcgtagatgctaatttgcagatacccaaagaa
ctgaccttggcaaacaagagggagatacttaagaaggcaagcgaaagtctcacatctggt
gaaataacacaggatgagttccttgtcctgtgtcataagattcgccaacttttccagtat
caggaaggaaagcatagatctgagtgggataatacaccaggtgaaaaggggatgtccaaa
aagaagcccttattatccgaatcggatttaatataccatgaacacaaagctaagctaaaa
cgaacgcaagttcaacattcatttccaagactcaatatgatagatgctgaagaaatatta
gactatcacttacctgatggatttctttctggaatggactgtgaccaaacaaaaaacaaa
tgcagtgctcagtttggcgaaagatcaagacgacattctcctgttggtggtagcagacca
tactctgataattctccacatgatgtcaggagaagacacgatgagccaagtgcctcgaaa
ggtcttcgggaagagcagagaatcaatgacattttcaagcgagcaagatacgaagataca
gaaaaaccgttcactgaccttccaggatcacgatttggggcctctgatgggaagcaaagg
tttagttcactgattgaggacagagctcattttgaaggttctcctagacatcctggcata
agggcaagtggagatggacaatcaggtcattttgaagggccagctaatgcagctcctaga
attgaagggccacaagcacagactaatttaaggtttgaaggatctctaggtcagccaact
gctcagtttgaaggacctcaagggcaatctggaggaaaaggttctcacatgtttgatggg
ccaccagcacagcttgggagtggtcccttaaggtttgatggaccctcggggcaagttagt
acaggcagtactatacgatttgaaggtccgataggacaaccagggggaggtttacgattt
gaggggccttcaggccaatctgtgggtggaatgagatttgaagggacccatggtcaaccc
tcgggaggaatgcgatttgaaggacctcacagtcatacaacagctagtattaggttcgag
ggacctcatggccagtcttctgctggaatgaggtttgaaggcatgcatgatcagccatca
aataatataagatttgatggccagccttcgggtggattgaggttcgaagggcctcatggc
caaccttcaaatgccataagatttgaaggacctcatgaccggccagtgggacctcatggt
ccaccaggaagtggaatgagatttgaaggaccacatggacagcctgtagggcctcatggc
caacaaggatctggtctaagattagaagccccacatatgcaaccggtggggtctctggga
caaccaggaagtaatatgccatttgacgcgccacatggacagcccattggtccacatgtg
cagcctgcgagtggtctgagatttgagggccctcatgggcaacctgtaggggcgcacggt
caaccccttggctctaggtttgaggggcctcacaatcagcctctggggccacatggacag
cccattggtccacatgtgcagcctgcgagtggtctgagatttgagggccctcatgggcaa
cctgtaggggcgcacggtcaaccccttggctctaggtttgaggggcctcacaatcagcct
ctggggccacatggacagctgggaatttctcccaggttcgaggcaccttcagttcagact
ggaggtggacttagatttgaagggcctattaaccagacaagatttgatggctgtccgtca
agatttgatggtcagcctggccagccatctattttacaaagactggacggattacacgta
cagcctgcttcaaggtttgaaattggccctgctcaaacaccacctcgattcgatggccca
cctggtcagcaggtccaacctcggtttgatacaatacttcagcggtttgacgatcctcaa
catccaggaacacgatatgacatcctccttggtcatcagggcccaagaattgaaaacgta
gctaaccatcctggctcaagattagagacggcaccatatggacaaaccggcccttacagt
gaaactcccaaccagtcaccttataacggggcatcacaaggactgcagttccagagacct
gaccaaatatttgataatccccaaggaccaaacttcagtggcccacctgtttctgcagca
cagcactttcctaatgcaattaacagggccccaggacctttttatgacgacaaaaatctt
cagggccctcagttcagaaattttaataatatgacagttggtaacgttcagccgccacag
caggtacctgttctgccagtatcttctggccagcctttcagtcaagggcagccactattg
ccagtccatgcacaaaaccctggaggttttgttcaaaatcagccaggaaacatcccactt
tcctaccctgataatcaccttggacaacttgatgtgaatgagttattttcaaaactactc
tctacaggaatccttaaatcattacagcccgattcatcttcatcccaagtcagtgaagtt
tcaactcaaccacctccagaggaagaagaggatgatcaagatcagaatgaggatattcca
gacctaactaattttgtgatagaagaactaaaacaacgttacgatagcgttataaacagg
ctctacactggcattcagtgttactcttgcggaatgaggtttacaacttcccagacagat
gtgtatgcagaccatctggattggcactatcgccagaaccgtacagaaaaggatgttagc
aggaaaatcactcacagaagatggtactacagtttaacagattggatagagtttgaagaa
atagccgatttagaggagcgtgcaaagagccagttctttgaaaaagtacatgaagaagtt
gtattaaaaactcaagaagctgctaaggagaaggagtttcagagtgtccctgcaggccca
gctggagtggatgagagctgtgaaatctgccaggagcagttcgagcaatattgggatgag
gaagaggaggaatggcacttaaaaaatgcaattcgtgtagaggagaagatctaccatcca
tcgtgttacgaagattatcaaaagacttcatcatttgattccaccccatctccaagcaag
actcctgtggagaacccactaaatattatgttgaatattgtcaaacaagagggacaggac
tcatgtaacagccccaaagttaaagaagaaccggaagaaaaagctacggattgcacagat
gggaatatacctgaatctgctgaaattaaaacagagcctctaaaggttgaatcagtttaa
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integrated database retrieval system
