Amycolatopsis pretoriensis: MUY14_19135
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Entry
MUY14_19135 CDS
T08335
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aprt
Amycolatopsis pretoriensis
Pathway
aprt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aprt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUY14_19135 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aprt03400
]
MUY14_19135 (ligD)
Enzymes [BR:
aprt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUY14_19135 (ligD)
DNA repair and recombination proteins [BR:
aprt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUY14_19135 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UOX92630
LinkDB
All DBs
Position
4383753..4385720
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AA seq
655 aa
AA seq
DB search
MAAEDASRAPAWVEPMLAKADGGRLRSGPEWAYEYKLDGYRAAMRIAPDGTTVLTSRNNI
DFTAEFADLDGVLAPALDGRAAYLDGEIVVYGDDGRIDFELMQERRGRYVRHQSGPPGRE
FEDVPVRFLAFDLLRLGDRSLLATPYDERRALLASLPMPDPYRVSVVRAVTFDELAADRR
TPADFLAHAASAGYEGVVAKLRSSAYVPGQRPDSWLKHPLIRTQEVVVCGWRPGQRSFTG
TLGGLLLGAHDPATGALVYIGDVGTGFSQAARADLKARLERLERRTHPFMSAPPREDTVR
ARWVEPRLVGEVVYRQFTRAGRVRHTAWRGLRADKDPADVIAPRAVPHEPPPPPPENRIT
VQAGDRRLTLSNLDKVLYPADGFTKGEVINYYSRVAPVLLPHLAGRPVTFIRYPNGVDGE
KWFEKNAPNGAPSWLRTARLPSTGSRGSGDSIDYPLLDDLPGLVWAANMAALELHVPQWT
VTDGARGLPDRLVFDLDPGPGTSIVDCCRVAERLHDVLVADGLTPYAKTSGSKGMQLYCG
IETADAAAPSAYAKRLAQRLAKETPETVTAVMAKAQRSGRVFIDWSQNNPAKTTVAPYSL
RGRDHPTASTPVTWEEVRACRHVTHLTFTAEDVLDRITDVGDLLAGLIGARAPLP
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaagacgcgtcccgcgccccggcctgggtcgagccgatgctcgccaaggcc
gacggcggacggctgcgcagcggccccgaatgggcgtacgagtacaagctggacggctac
cgcgcggccatgcgcatcgcccccgacggcaccaccgtcctcaccagccgcaacaacatc
gacttcaccgccgaattcgccgacctcgacggcgtcctcgccccggcgctcgacggccgg
gccgcctacctggacggcgaaatcgtcgtctacggcgacgacggccggatcgacttcgag
ctgatgcaggaacgccgcggccgctacgtccggcaccagagcgggccaccgggccgcgag
ttcgaggacgtgcccgtccggttcctggccttcgacctgctccggctcggcgaccgcagc
cttctcgccacgccgtacgacgagcgccgcgccctgctggcgagcctgccgatgcccgac
ccgtaccgcgtctcggtggtgcgcgcggtcaccttcgacgagctcgccgccgaccgccgc
acgccggccgacttcctcgcccacgccgcgtcggccgggtacgaaggcgtcgtcgcgaag
ctgcgcagctccgcttacgtgcccgggcaacggccggactcctggctcaagcacccgctg
atccggacccaggaagtcgtcgtctgcggctggcggccgggccagcgcagcttcacgggc
acgctcggcggcctgctgctcggcgcgcacgaccccgcgaccggcgccctcgtctacatc
ggcgacgtcggcaccggcttcagccaggccgcccgcgccgatctgaaggcccggctggag
cgcctggagcgccgcacgcacccgttcatgtcggcgccgccgcgcgaagacacggtgcgc
gcccgctgggtcgaaccgcggctggtcggcgaggtcgtctaccggcagttcacccgcgcg
gggcgcgtccgccacaccgcctggcgcggcctgcgcgccgacaaggacccggccgacgtc
atcgccccgcgcgcggtgccgcacgagccgccgcccccgccacccgagaaccggatcacc
gtccaggcgggagatcgacggctcacactgtccaatttggacaaggtgctgtaccccgcg
gacggtttcaccaagggcgaggtgatcaactactactcccgcgtcgcgccggtcctgctg
ccgcacctggccggccgcccggtgacgttcatccgctacccgaacggcgtcgacggcgag
aagtggttcgagaagaacgccccgaacggcgccccgtcctggctgcgcacggcgcgcctg
ccgagcaccggctcacgcggcagcggcgacagcatcgactacccgctcctggacgacctc
ccgggcctggtgtgggcggcgaacatggccgcgctcgaactccacgttcctcagtggacg
gtgaccgacggcgcgcgaggcctgccggaccgcctggtgttcgacctggatcccggcccc
ggcacgtccatcgtggactgctgccgggtggccgagcgcctgcacgacgtcctggtggcc
gacgggctcacgccgtacgcgaaaacatcgggctcgaaggggatgcagctctactgcggc
atcgaaaccgccgacgcggcagccccgtccgcctacgcgaagcggctcgcccagcgcctc
gcgaaggagacgccggagacggtgaccgcggtgatggcgaaggcacaacgcagcggccgg
gtgttcatcgactggagccagaacaacccggccaagacaacggtggccccgtattccctg
cgcggccgcgaccacccgacggcctcgaccccggtgacgtgggaggaggtccgcgcgtgc
cggcacgtcacccatttgacgttcaccgcggaggacgtcctcgaccgcatcaccgatgtg
ggtgatctcctcgccgggttgatcggtgcgcgagcgccgttgccttag
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