Amycolatopsis pretoriensis: MUY14_42705
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Entry
MUY14_42705 CDS
T08335
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aprt
Amycolatopsis pretoriensis
Pathway
aprt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aprt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MUY14_42705 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aprt03400
]
MUY14_42705 (mfd)
Enzymes [BR:
aprt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUY14_42705 (mfd)
DNA repair and recombination proteins [BR:
aprt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MUY14_42705 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UOX93525
LinkDB
All DBs
Position
9370177..9373731
Genome browser
AA seq
1184 aa
AA seq
DB search
MSGLLTAILPDPALRGVVERAGAPLLELQGPIAARQLVAAALAADDGAGKPVLAVTATGR
EADELTASLGALLGKHRVTDFPSWETLPHERLSPRADTVGRRLEVLHRLKKGDDSLRVVV
ATVRSLIQPMAPGLGSLEPIDLVVGEEEPFEELLERLVELAYTRVDMVEKRGEFAVRGGI
LDLFGPTAQHPVRVEFWGDEVSEIRAFAVSDQRSLPGEIPRVTAPPCRELLLTAPVREKA
AELAKTYEADAHLAEMLTKLADGIPVEGMEALIPVLCEGELELLTDAMPVGAHVLLTDPE
KIRARAADLVRTGQEFLEASWTTAAAGGQAPIDLGASAYRGLGEIASHAQDTKRAWWTLT
QLTTEDPDVLRVSVEAAPAYRGELERAMTDLRAHTAAGGTAVLVVAGQGTAARAVEQLSG
ADVPATLAGDGLTGMPAAGLVTVTCGGLTDGFVSPERALVVLTEADLTGRGSGAGTSTKD
LTSKMPSRRRNAVDPLALKNGDYVVHEQHGIGRFVEMVQRTVAGATREYLLLEYGSSKRG
HPGDRLFVPTDQLDEVSKYVGGELPTLNKLGGSDWKNTKARAKKAVKEIAAELVQLYAAR
QAAPGHAFGPDTPWQGELEDAFPFTETNDQLAAIDEVKSDMERGVPMDRVICGDVGYGKT
EIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFHERMRSFPVTIKGLSRFTNKTESDLI
LEQLAAGEVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMS
ATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGAYDDKQVGAAIRRELLRDGQVFYV
HNRVSSIEKAARHIRELVPEARVVTAHGQMNEDKLEKIIQGFWENEYDVLVCTTIVETGL
DISNANTLLVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQ
NTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVDAFRRHAGAEPA
EDEELAEVRVDLPIDAHIPHDYVPGERLRLEAYRKIAAAPDTEGLDAVREELIDRYGQPP
APVNRLLSVARFRHTCREAGVTEVAVQGNTVRFAPLPLADSQMVRLKRLYPKAVYKAVTN
TVSVPKPTEGPAGGRIGAPTLRDEELLDWCAKLLGQLTKKPATV
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgtccggactcctcaccgccatccttcccgacccggcactgcgcggcgtggtcgagcgc
gccggcgcgccgctgctcgaactgcagggcccgatcgccgcccggcagctcgtcgcggcc
gccctcgcggcggacgacggcgcgggcaaacccgtgctcgccgtgaccgccaccggccgc
gaggccgacgagctgaccgcgtccctcggcgcgctgctgggcaagcaccgcgtcaccgac
ttcccgagctgggagacccttccgcacgagcggctctcgccccgcgcggacaccgtcggg
cgccgcctggaggtgctgcaccggctcaagaagggggacgactccctgcgcgtggtcgtc
gcgaccgtccgcagcctgatccagccgatggcgcccggcctcggctcgctcgagccgatc
gacctcgtcgtcggcgaagaggagccgttcgaggagctcctcgaacggctcgtcgaactg
gcgtacacccgcgtcgacatggtcgagaagcgcggcgagttcgccgtccgcggcggcatc
ctcgacctgttcggcccgaccgcgcagcaccccgtccgcgtcgagttctggggcgacgag
gtcagcgagatccgcgcgttcgccgtctccgaccagcggtcgctgcccggcgagatcccg
cgcgtcaccgcgcccccgtgccgcgagctgctgctcaccgcgccggtccgggagaaggcc
gcggagctggcgaagacgtacgaagcggacgcgcacctggccgaaatgctcaccaagctg
gccgacggcatcccggtcgagggcatggaggcgctgatcccggtcctctgcgaaggcgag
ctcgagctgctcaccgacgcgatgccggtcggcgcgcacgtgctgctcaccgacccggag
aagatccgcgcccgcgccgccgacctcgtccgcaccggccaggagttcctcgaagcgtcc
tggacgacggccgcggcgggcggccaggccccgatcgacctcggcgcgtccgcctaccgc
gggctcggcgagatcgcgtcccacgcgcaggacaccaaacgcgcctggtggacgctgacc
cagctgaccaccgaagacccggacgtcctgcgggtgtccgtcgaagccgcgccggcgtac
cgcggcgagctcgagcgtgcgatgacggacctgcgcgcccacacggcggcgggcggcacg
gcggtgctcgtcgtcgccggccagggcaccgcggcgcgcgcggtcgagcagctctcgggc
gcggacgtcccggcgacgctggccggcgacggcctcaccgggatgcccgcggcgggcctg
gtcacggtcacctgcggcggcctgacggacggcttcgtctcgccggagcgcgcactggtc
gtgctcaccgaggcggacctgaccggccgcgggtccggcgccggaacgtccacaaaggac
ctcaccagcaagatgccgtcccggcggcgcaacgcggtggacccgctggcgctcaagaac
ggcgactacgtcgtgcacgagcagcacggcatcggccggttcgtcgagatggtgcagcgc
acggtcgccggtgcgacccgcgagtacctgctgctggagtacgggtcgtccaagcgcggg
cacccgggcgaccggctgttcgtgccgaccgaccagctcgacgaggtgtccaagtacgtc
ggcggcgagctgcccacgctgaacaagctcggcggctccgactggaagaacaccaaggcc
cgggccaagaaggcggtcaaggagatcgccgccgagctggtccagctctacgccgcgcgc
caggccgcgcccgggcacgcgttcggcccggacacgccgtggcagggcgagctcgaggac
gccttcccgttcaccgaaaccaacgaccagctcgccgcgatcgacgaggtcaagtcggac
atggaacgcggcgtcccgatggaccgcgtcatctgcggcgacgtcggctacggcaagacg
gagatcgccgtgcgcgcggcgttcaaggcggtgcaggacggcaagcaggtcgccgtgctc
gtgccgacgaccctgctcgcgcagcagcacctgaacaccttccacgagcgcatgcgctcg
ttcccggtgacgatcaagggcctgtcccggttcacgaacaagaccgagtcggacctcatc
ctggagcagctcgccgccggcgaggtcgacatcgtgatcggcacgcaccgcctgctgcag
acgggcatccggtacaaggacctcggcctcgtgatcgtcgacgaggagcagcgcttcggt
gtcgagcacaaggaacacatcaaggcgctgcgcacgcacgtcgacgtgctgacgatgtcc
gcgaccccgatcccgaggacgctggagatgtcgctggccggcatccgcgagatgtcgacg
atcctcaccccgcccgaggaccggcacccgatcctgacgtacgtcggcgcgtacgacgac
aagcaggtcggcgcggccatccgccgcgaactgctgcgagacggccaggtcttctacgtc
cacaaccgcgtctcctcgatcgagaaggcggcgcggcacatccgggagctggtgccggag
gcgcgcgtcgtcaccgcgcacggccagatgaacgaggacaagctcgaaaagatcatccag
ggcttctgggaaaacgagtacgacgtcctggtgtgcaccacgatcgtcgaaaccgggctc
gacatctcgaacgcgaacacgctgctcgtcgaacgcggcgatctgctcgggctggcgcag
ctgcaccagttgcgcgggcgcgtcgggcgcgggcgcgagcgcgggtacgcgtacttcctg
tacccgccggaggccccgctgacggagaccgcgcacgaccggctggcgacgatcgcgcag
aacaccgagctgggcgcgggcatggcggtcgcgatgaaggacctcgagatccgcggcgcg
ggcaacatcctcggcgcggagcagtccgggcacatcgcgggggtcgggttcgacctgtac
gtgcggttggtcggcgaagcggtcgacgcgttccggcgccacgcgggcgcggagccggcg
gaggacgaggaactcgcggaggtccgcgtcgacctcccgatcgacgcgcacatcccgcac
gactacgtcccgggcgagcgcctgcggctggaggcgtaccgcaagatcgcggcggcgccg
gacaccgagggcctcgacgcggtgcgcgaagagctgatcgaccgctacggccagccgccc
gccccggtgaaccggctgctgtcggtggcgcgcttccgccacacgtgccgcgaggcgggc
gtgacggaggtggcggtccaggggaacacggtccggttcgcgccgttgccgctggccgat
tcgcagatggtccgcctgaagcggctgtacccgaaggcggtgtacaaggcggtgacgaac
acggtgtcggtgccgaagccgaccgagggcccggcgggcggccggatcggcgcgccgacg
ctgcgggacgaggaactgctggactggtgcgcgaagctgctgggacagctgacgaagaag
ccggcgacggtctag
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