Lancefieldella parvula: Apar_0519
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Entry
Apar_0519 CDS
T00983
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
apv
Lancefieldella parvula
Pathway
apv03410
Base excision repair
apv03430
Mismatch repair
apv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Apar_0519
03430 Mismatch repair
Apar_0519
03440 Homologous recombination
Apar_0519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apv03400
]
Apar_0519
DNA repair and recombination proteins [BR:
apv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Apar_0519
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Apar_0519
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Apar_0519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DHH
RecJ_OB
DHHA1
ResIII
ssDNA-exonuc_C
SecA_DEAD
SNF2-rel_dom
SWI2_SNF2
ThiG
Motif
Other DBs
NCBI-ProteinID:
ACV50950
UniProt:
C8WA12
LinkDB
All DBs
Position
598042..601404
Genome browser
AA seq
1120 aa
AA seq
DB search
MPGIEKSTRWSVLTQDVYLESLFEKELHVTPLVARVLVARGFTDVAEAQEFLSPSLQRDW
LDPQCIPGMAEVANRVQKAIVEQQKIAVFGDFDVDGMSSTCLLTLALRRLGADVLPYIPH
RFGEGYGLSKEALARVLLDRKPDLIITVDNGIAAAQEVAWLLEQGIDVVITDHHEPADLV
PQGVPVTDPKLIEDCPSRELAGAGVALKLVQVLGQLQNQPQLWLDYIDVAMLGTLSDMMM
LNKENRALVSEGVKRLQKGLRPGLVALAAVAGQDIAQISADNLPFSIIPRLNAAGRMGTT
DIALDLLLTEDAEEATILAGKLEEINAERRAIEAKLTDEALEQAKEIYDGGHAIVLAKEG
WHEGVKGIVASRIVNRYHVPCILFTIQDGVARGSGRSVGSVDLFHAVEQCADLTVRFGGH
QGAVGVTVETSKIDAFRKRLSEVMAELPEEEFESSGEVTALVNLDEITINSIDALEALQP
FGQGNKKPLFGVKGVVMKNRSRVGAGGAHLCFMASNGISSISSIMFRTPHVEAAAEYDGA
VDLIFEAVNETWQGRTKPKLMVRDILYRDFTDEDDGPIEADLLGSAVDLPLVVTKEATET
EEASQEQSQQKRHELESLPYEELTQTLVTSMIGSRELLPLQKKTLEVLSQGESCLSVMAT
GRGKSLIFQVYAACVALLQHKMSVFVYPLRALINDQVQSMKNTFEPLGISVEVLNGETDL
TSREDLFARMANNELDIVLTTPEFFSLHADQFAAAHNISFVVFDEAHHVGMNASEGRLAY
AQMPQVLKMLGNPQVLATTATATTQVAQRICELLSIDADHVYKDKTARTNLELKDLRSAK
DRECALLSLVSDGTKTVVYVNSREQAQALTRMLRHRIPEIGHKVAFYHAGLTPQIRKNVE
RAFRRGDVCCIIATSAFGEGVNISDIRQVILYHLPFGRVAFNQMSGRAGRDGKPSKIYML
FDAHDMRVNERILSSRAPQREALVAVYRALTALQPKLVAQPTNPALTDEDIAQMALEIDP
RSKADEQIVRVALDVFVELGFISIEGFDQTRVISVNSQASHMDLLESARYAEGLKAHTEF
ESFAQWVFSASLDELADAITKPIVPEIGPIFDGGRESSNE
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcatcgagaaaagcactcgctggagtgttcttacgcaagacgtatatctagag
tcattgtttgaaaaagaattgcacgttaccccacttgttgctcgtgtgttggtagcacgt
ggatttaccgatgtagctgaagctcaagagtttctctcaccatccctgcaaagagattgg
cttgatccacagtgtattccaggaatggctgaggttgccaatcgtgttcaaaaggccatt
gttgaacagcaaaagattgctgtttttggtgactttgacgttgatggaatgagttcaact
tgtttgctcaccttggctttgcgccgattgggtgctgatgttttgccgtatattccacat
cgatttggtgaaggatacggactttctaaagaggctttagcaagagttttactagataga
aagcctgatttaattattacggtagacaatggtattgctgctgctcaagaggttgcatgg
cttttggaacaggggattgatgttgttattaccgatcaccatgaacccgcagatttggtg
ccccagggtgtccctgtaactgatccaaaacttattgaggattgtccttccagagagctt
gctggtgcaggcgttgcccttaagctagtacaagttttagggcaacttcaaaatcagcct
cagctttggcttgattacattgatgttgccatgttgggcacgctgtctgacatgatgatg
ctcaataaagaaaatcgtgcactggtctctgaaggtgttaaacgtctacagaaaggcctt
cgtcctggtctggtggctcttgctgctgttgccggtcaagatattgcacaaatttctgca
gataatctgccattttctattattccacgtcttaacgcggcaggtcgtatgggtactacc
gatattgcccttgaccttcttctcacagaagatgcagaggaggcaactattctggctggc
aagctggaagagattaatgctgaacgtcgtgctattgaggcaaaactcactgatgaagcc
cttgagcaggcaaaagaaatctacgacggtggtcacgctattgtgcttgccaaagagggt
tggcacgagggtgtaaagggtattgttgcttcaagaattgttaatcgctatcacgtacct
tgcattctgtttaccatccaagatggcgtagctcgtggttctggacgctcagttggctcc
gttgatttattccatgcggtagagcagtgtgcagatcttactgttcgttttggtggtcac
cagggtgctgttggcgtaacggtagaaacatcaaagattgatgcatttagaaagcgctta
tctgaggttatggcagagcttccagaagaagagtttgagtcttcaggagaagtaactgcc
ttggtaaaccttgacgagattactattaactctattgatgcacttgaggcgctgcagcct
tttggtcagggtaacaaaaaaccgctctttggcgttaagggcgtagtgatgaagaatcgt
tcgcgcgttggcgcaggcggagctcatctttgttttatggcttcaaatggcatctcttca
atttcatccattatgttcagaacacctcatgtagaggcggcagctgagtatgacggtgct
gttgatttgatttttgaggcagttaacgagacttggcaaggtagaaccaaaccaaaactc
atggttagagacattctctacagagactttaccgatgaagatgatggtcccattgaagcg
gaccttctcggcagtgctgttgacttgccacttgtggttaccaaagaggctacagagact
gaagaagcgtctcaagaacagtcgcaacaaaaacgccatgagctggagagcctgccttat
gaggagctcactcagaccctggttacatccatgattggttcaagagaactcttgcctcta
caaaagaaaacattagaggttctctctcaaggagaatcctgtctctctgttatggcaaca
ggtagaggtaaatcactcattttccaagtttacgctgcttgtgttgcacttctgcaacac
aagatgagcgtatttgtttacccactgcgtgccctcatcaacgaccaggttcaaagtatg
aagaatacctttgagcctctgggaatttctgttgaggtgcttaacggagaaacagacctt
accagtcgagaagacctgtttgctcgcatggcaaacaatgagcttgatattgtgctgact
acaccagagtttttctcgctccatgctgatcagtttgctgcagcgcataacatttcgttt
gtggtgtttgacgaggcccatcacgtgggaatgaatgcttctgagggcagactcgcctac
gcacagatgccacaggtacttaagatgcttggaaatcctcaggtacttgccacaacggct
acggctaccacgcaggtagcccagcgtatctgtgaacttctctctattgatgcagaccac
gtatataaagacaaaactgctcgtactaaccttgaacttaaggatcttcgtagtgcaaaa
gatagagagtgtgctctactttctcttgtgtctgatggcacaaagacggttgtctacgtt
aattcaagggagcaagcgcaggctttgacgcgcatgctgcgtcatcgcattccagaaatt
ggtcataaggttgcgttttatcatgcgggtttaacgcctcagatacgtaagaacgttgaa
cgtgcatttagacgcggtgacgtttgctgcattattgctacaagtgcgtttggcgagggc
gttaatatctccgatattcgccaggtcattttgtatcacctgccgtttggtcgtgttgca
tttaatcagatgagtggacgtgcaggtagagatggcaagccttctaagatttatatgctt
tttgatgcacatgatatgcgcgttaacgagcgtattctttcttctcgtgcgcctcagcga
gaggcccttgttgcagtttatcgtgcgcttactgcattgcaaccaaagcttgtcgcacag
ccaactaatcccgcacttactgatgaagatattgcacagatggcgcttgaaattgatcca
agatctaaggccgatgaacaaatcgttcgtgttgcacttgacgtttttgttgagctaggg
tttattagcattgagggatttgatcaaacacgagtaatttccgtcaatagtcaagcttcg
cacatggacttgttggagtctgctcgctacgctgaaggacttaaagcgcacactgagttt
gaatcatttgctcagtgggtcttttctgcttcactagatgagctggcagatgctataaca
aaacccatcgttccagagattggtccaatatttgatggggggagggagtcctctaatgag
tga
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