Aquimarina sp. ERC-38: NBT05_05625
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Entry
NBT05_05625 CDS
T09583
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aqe
Aquimarina sp. ERC-38
Pathway
aqe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aqe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NBT05_05625 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aqe03400
]
NBT05_05625 (mfd)
Enzymes [BR:
aqe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NBT05_05625 (mfd)
DNA repair and recombination proteins [BR:
aqe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NBT05_05625 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
SBP_bac_3
RecG_dom3_C
NDUF_C2
Motif
Other DBs
NCBI-ProteinID:
UZO81944
LinkDB
All DBs
Position
complement(1320236..1323598)
Genome browser
AA seq
1120 aa
AA seq
DB search
MLRAEIVSNQFDTSASVRKFIELLDTNQKNIFLQGLIGSSLSFVLQKTFKTTGKPILCVF
DDKEEAAYYLNDLEQLVQKENVLFFPGSYRRPYQIEETDNANVLLRAEVLNRINSKKKPS
IIVTYPDALFEKVVTRKELEKNTLHIALNDKLSLDFVNEVLFEYQFKRVDFVTEPGEFSV
RGGIVDVFSFSHNEPYRIEFFGDEVDSIRTFDVETQLSIEKTSKISIVPNLADKSIQESH
ESFFKYIAPDTILVLKNLEALKHQNDQNFEKAKEAFAKLSGEIKRKSPEELFASSELLFS
QLSTFSQVHLSVNHTKEAVKIAFQTKPQPSFNKQFNLLIENLNKNHSAGYTNYIFCVSEQ
QAKRFHDIFEDADLDVKQYETVVFSAYQGFIDEELKVVCYTDHQIFERYHKFTLKNGYAK
KQAITLKELNNLEVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIYGERDVLYLSIHS
LHKISKFNGKDGKPPQIYKLGSKAWKTLKQKTKARVKHIAFNLIQLYAKRRLQKGFQYAP
DSYLQHELEASFIYEDTPDQSTATEDVKKDMESERPMDRLICGDVGFGKTEVAIRAAFKA
VDNGKQVAVLVPTTILAFQHAKTFKDRLKDFPVVVDYLNRFRTAKQKREVLEDLANGKID
IVIGTHQLVNKNVKFKDLGLLIIDEEQKFGVSVKDKLKTIKENVDTLTLTATPIPRTLQF
SLMAARDLSTITTPPPNRYPIETHVIRLAEETIRDAVSYEIQRGGQVFFIHNRIENIKEV
AGMIQRLVPDAKVAVGHGQMEGKKLEELMLSFMNGEFDVLVSTTIVESGLDVPNANTIFI
NNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSVMTDDARKRITALEQFSDLGSGIKI
AMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFAELYDTSNEPKEYV
KDTQIDTDFELLFPDDYINNITERLNLYTELNNIKTEEELLAYEKRLEDRFGELPDPAVD
LLNSVRIKWIATSIGIEKIILKQQKLIGYFISDQQSPFYQTEAFTNVLKYVQQHPGKVKM
KEKKTRNGLRLLLNFENITSIDKALQVLEPFKQEKAEVIS
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgcgcagaaattgtttcaaatcaatttgatacatccgcttccgttcggaaattt
attgaacttcttgatacaaatcagaaaaacatttttctacagggattgattggttcttct
ctttcttttgtccttcaaaaaacttttaaaactacgggtaagcctatcctatgtgtgttt
gatgataaagaagaagctgcctattatctgaatgaccttgaacaattggttcaaaaagaa
aatgtgctgttttttcccggtagttaccgtcgtccgtatcaaattgaagaaacagacaat
gccaacgtattactgcgcgccgaagttttaaaccgaatcaattcaaagaaaaaaccttct
atcatagttacctatccggatgctttatttgagaaagtagttacccggaaagaactggaa
aaaaacaccttacatattgcccttaatgataagttatctcttgattttgtaaacgaagta
ttatttgaataccagtttaaacgggtagattttgtaacagaaccaggtgaattttccgtg
cgtggagggattgtagatgtgttctcgtttagtcataatgaaccttatcgtatcgaattt
tttggagatgaagtggatagtattcgtacgtttgatgtagaaacccaactttctatagaa
aaaaccagtaaaatttcaattgttccgaatttagccgataaaagtatacaggaaagtcac
gaaagtttctttaaatacattgccccggatactattttggttttgaaaaacctggaagcc
ttaaaacatcagaacgatcagaattttgaaaaagcaaaagaagcttttgccaaactttcg
ggtgaaatcaaaagaaaatctcccgaagaactttttgcttcttccgaattacttttttcg
caacttagcaccttttctcaggtacatttaagtgttaatcatacaaaggaagcagtaaaa
atagcttttcaaaccaaaccccaaccttcatttaacaagcagttcaatctgttaattgaa
aatttaaataaaaatcattcggcgggatataccaattatattttttgtgttagtgagcaa
caggcaaaacgctttcacgatatttttgaagatgcggatttggatgtcaagcaatatgaa
acggtggtattttctgcatatcaagggtttattgatgaggaattgaaagtagtttgttat
acggatcaccagatttttgaacgctaccataagtttactttaaaaaacgggtacgctaag
aaacaggcaattaccttaaaagaattaaataacctggaagttggggattatgtgacccat
attgaccacggaattggaaagttcggagggcttcagaaaattgacgtggaaggcaaaaaa
caggaagcgattaaattgatctacggagagcgtgatgtattgtacttaagcattcactct
ctacataaaatatccaagtttaacgggaaggatggaaagcctccgcagatttataagctg
gggtctaaagcctggaaaacccttaagcaaaaaaccaaagcccgggtaaagcatattgct
tttaacctaattcaactttacgcaaagaggcgtttgcagaaaggttttcaatacgccccg
gatagttatttacaacacgaactggaagcttcttttatctacgaagataccccagatcaa
agtaccgctaccgaggatgtaaaaaaagatatggaaagcgaacgccctatggaccgtttg
atatgtggagatgtaggttttggtaaaaccgaagttgctattcgtgctgcttttaaggcg
gttgataacggaaaacaagtggcagtactggtacccactaccattcttgcttttcaacat
gctaaaacttttaaagaccgtttaaaagattttccggtagtggtggattatttaaaccgg
tttaggactgccaaacaaaaaagggaagtgctggaagacctggcaaacgggaaaatagat
attgtcatcggtacccatcaattggtcaataaaaatgtaaaatttaaggatttaggctta
ctgattattgatgaagaacaaaaattcggggtttcagtaaaggataagttgaagacgatt
aaagaaaatgtagataccctgaccttaacggctacacctatcccaaggactttacaattt
agtttaatggctgctagggatttgtctacgataactacccctcctcctaatcggtatcct
attgaaacacatgtcattcgcctagcggaagaaactattcgggatgcggttagttacgaa
attcaacggggtggacaggtattttttattcataaccgaattgaaaacattaaagaagta
gccggaatgattcaacgcctggttccggatgctaaagttgcggtaggtcacggacaaatg
gaaggcaaaaaattagaagagttgatgctttcttttatgaacggggagtttgacgttttg
gtttctacgacaattgtcgaaagtggattggatgtgcctaatgccaatactatctttatt
aataatgctaataattttggtttgtcggaccttcatcaaatgcggggacgtgtaggccga
agtaataaaaaagctttttgttattttatcaccccaccttactcggtgatgacggatgat
gctcggaaacggattaccgccctagaacaattttcggatttaggtagtggtattaaaatt
gccatgaaagacctcgaaatccggggagcgggagatttattagggggagaacaaagtggt
tttatcaacgaaatcggttttgatacctatcagaagattctaaatgaagccattgaagag
ttaaaagaaaatgagtttgccgaattgtacgatacaagcaatgaaccaaaggaatatgta
aaagatacccaaattgatactgactttgaacttcttttcccggatgattacatcaataat
attaccgaacgcttaaatttatatacggaactcaataacattaaaaccgaagaagagctg
ttagcttatgaaaagcgtttggaagatcggtttggagaacttcctgatcctgcggtagat
ttattgaattcggttcgtattaagtggattgccaccagtattggaattgagaaaataatt
ttaaaacaacagaaattgataggttactttatcagcgaccaacaatccccgttctatcaa
accgaagcttttactaatgtcctaaaatacgtgcagcagcatcctggaaaagtaaaaatg
aaagaaaagaaaacccgaaatggtttacgtctccttttaaattttgaaaacattacctcg
attgataaagctttacaggtgttggagccttttaagcaagaaaaagcagaagttatttca
taa
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