Aquiluna borgnonia: HRU87_01855
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Entry
HRU87_01855 CDS
T06624
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aqg
Aquiluna borgnonia
Pathway
aqg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aqg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HRU87_01855 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aqg03400
]
HRU87_01855 (mfd)
Enzymes [BR:
aqg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HRU87_01855 (mfd)
DNA repair and recombination proteins [BR:
aqg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HRU87_01855 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
DUF3638
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QKJ24971
UniProt:
A0A7D4TIM0
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All DBs
Position
348886..352368
Genome browser
AA seq
1160 aa
AA seq
DB search
MTLHPLVSEVGQPHPKSLAAAFFAPVEAHGIILNKWLSDSREPLAVITASSRQSNEIAAI
TAELNPGIEVVEFPSWETLPHERLSPSAETVGRRLRALHRILELGKTSQPYLILMSIRAA
LQPVVGGLEDHPPFNLIRGKDYLLPELGLKLIELGYLRVDMVVKRGEFAIRGGILDVFPT
TSEHALRLEFFGDELEDIREFSVADQRSIASQVDAIEIYAAKELLITPAVAAKAREMASE
FPNLTQMLEKISNGIVVEGMESLAPVLASKLGPITDYLSEKVTVVLQDPAKIQARAENLI
QTNQEFLHAAWDAAITGSQAPIDLSGGNFYDFDTFKSLAAKKRSLAELSTLQSEGAIDLG
FKEAPKFSAEQSVTDWLADLKTQQYRILITALGHGTAERIVEVLEKADLPAILTQSLGKL
SPDHITVAVGALQHGFAHQASKLLTLTESEFFGIASTYVAPGERKLARRRGQQVDPLSLK
QGDYVVHEIHGIGRFKELIQRTTTLGNRKNSREYLLIEYAPPKRGYPADTLFVPTDQLDL
LTKYVGGEAPVLSKMGGTDWARVKGNARKAVRKIAIDLVKLYSARMKSQGYAFGPDTPWQ
HELEEAFAFQETPDQLTTIDEVKRDMEKPIPMDRLLAGDVGYGKTEVAVRAAFKAIQDGK
QVAMLVPTTLLVRQHLDTFLARFSGFPITAKPISRFQSDKEIKETLRGLENGGVDMVIGT
HRLLGQSVKFKDLGLVIIDEEQRFGVEHKEKLKDLKHNVDVLAMSATPIPRTLEMAVTGI
REMSTLATPPEERHPILTYIGGYSEQQVAAAIRRELIREGQVFFVHNRVATIDKVAADIA
KLVPEARIAVAHGQMAEHQLEQVVVDFWERKFDVLVSTTIIETGIDIPNANTLIVDRAEA
FGLSQLHQIRGRVGRSRERAYAYFFYDPSKTLSETAHDRLATIATNNELGSGMQVAMKDL
EIRGAGNLLGGEQSGHIAGVGFDLYLRMIGEAVSEFKGEEISSPAELKLELPLDARIPPE
YVDSERLRLEAYHKLSSESSAKSDRGRLDAILSELEDRYGKAPQPVKTLIEVTHLRQQAN
RLGLKDVNLLGLQAKFAPVEIEDSELVALSHKIPGLRYLKTSKLLTLPSPSSSVGESLSD
QELIDWMWKIFQIVFAKGEK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
gtgaccctccacccacttgtttcagaggtgggtcagccgcacccaaaatcgctagccgct
gccttttttgccccggttgaggcccacggcatcatcctgaataagtggctcagtgactca
cgtgaacctcttgcggtaataactgcttcatctcgccaatccaatgaaattgcggccatc
accgcagagctaaaccccggaatcgaagtggtggaatttccatcttgggaaaccctgccg
cacgagcgcctgagcccttccgctgagactgttggaagaaggttgcgtgccctgcaccga
atcttggaattaggcaaaacctctcagccctacctgattttgatgtccatcagagccgca
ctgcagccggtggttggcgggcttgaggatcacccgcccttcaatctgattcgaggcaag
gactatctgctcccggagctgggactaaaactgatcgagcttggctacctgcgggtggac
atggttgtcaagcgcggagagtttgcgattcgtggcggcattctcgatgttttcccaacc
acaagtgaacatgcccttcggttagaattcttcggggatgagctcgaagacattagagag
ttctcggtggcggaccaaaggtccatcgcctctcaggttgatgccatcgaaatctacgcc
gccaaagagctgctgattaccccagcggttgctgcaaaggcgcgagaaatggcgagtgaa
tttcccaatctcacccagatgctggagaaaatttccaacggcattgtggttgaaggcatg
gaatccctggccccggttttagccagcaaacttggcccaatcaccgactacctctcggaa
aaagtgacggtggttcttcaggatccggcaaagattcaggcacgggcagagaacctaatc
caaaccaaccaggagtttttgcacgccgcttgggatgcggccataaccggatcgcaggcc
ccaatcgatctcagcggtggcaacttctacgattttgatactttcaaatctttggctgca
aaaaaacgctcgcttgcggagctgtcaacgcttcagagcgagggcgccatagatcttggc
tttaaagaggcacccaagttctctgccgagcagtcggtgacggattggttggcggatcta
aaaactcagcagtatcgaattctgatcaccgcactgggtcatggaaccgctgagcgcatc
gttgaggtgttggaaaaagccgatctgccggcaatcttgacccagtccctgggaaagctt
tcacccgatcacatcacagttgccgttggagccctgcagcacggctttgcccaccaggca
agcaagctgctcaccctcaccgaaagtgaattctttggaatcgcctccacctacgtggcc
ccgggtgagagaaagctcgctaggcgaaggggtcagcaggtcgacccgctgagtttgaag
cagggcgattacgtggtgcatgagattcacggcatcggcaggttcaaggagttgattcag
cgcaccaccacgcttggaaatcgcaaaaactccagagagtacctgctgattgaatacgct
ccgccaaagcgcggctacccagccgacacgctattcgtgcccaccgatcaacttgatctg
ctgactaagtatgtgggcggggaagctcctgtgctatccaaaatgggcgggaccgactgg
gcccgggtcaagggaaatgcccgcaaggcagtgcgcaaaatcgccatcgatctcgtcaag
ctctactcggcccgcatgaaaagccagggatatgccttcggacccgacaccccctggcag
catgagctggaagaggcattcgccttccaggaaaccccggatcagctcaccaccatcgat
gaggtcaagcgggatatggagaagccgattccaatggaccggcttttggcgggagacgtt
ggttacggaaagactgaggttgccgtccgggccgctttcaaggcgattcaagatggcaag
caggtagccatgctggtgccaaccaccttgctggtcaggcaacacctggataccttcctg
gcaagattcagcggattccccatcaccgcaaagccaatctcccgctttcaatccgataaa
gagatcaaagagactctgcgaggtttggaaaatggcggggttgacatggtgatcggaacc
catcgcctgcttggtcaatcggtgaagttcaaggacctcgggctagtgatcattgatgag
gagcagcgctttggtgttgagcacaaggagaagctcaaggatctaaaacacaatgtcgat
gtgcttgccatgagtgccacgccgattcctaggaccctggagatggcggtgactggaatc
cgagagatgtctacccttgcaaccccaccggaggagcgccatccgattctgacctacatc
ggcggctacagcgagcagcaggtggcggcagccattcggcgagaacttattcgagagggc
caggtcttcttcgtccacaaccgagttgcaaccatcgacaaggtggcggcggacattgca
aagctggttcccgaggccaggattgcagttgctcacggtcaaatggctgaacatcagctt
gagcaggtggtggtcgatttctgggagcgaaaattcgatgtgctggtttcgaccacgatc
attgaaaccggaatcgatattccaaatgccaacacgttgattgttgaccgcgccgaggcc
ttcggtttgagtcagctgcatcagattcgcggccgcgtgggccgatcccgagagcgcgcc
tacgcttacttcttctacgacccgagcaaaactctgagtgagactgctcacgatcgcctg
gccaccatcgccaccaacaatgaactgggcagcggtatgcaggtggcgatgaaggacctc
gagattcgcggtgcgggaaatctgctcgggggagagcagtccggacacatcgctggtgtt
ggctttgatctctacctcagaatgattggtgaggcggtctcggagttcaagggcgaggaa
atctcttccccggccgagctcaagctcgagctgccgctggatgctcgcatccctcccgag
tacgtagattccgaaagactgcgtcttgaggcctatcacaagctctcctccgagagctcg
gcgaagagcgatcgaggccgactggatgcaattttgtctgagctggaagatcgctacggc
aaggctccgcaaccggtgaagaccctgattgaggtgactcacctgaggcagcaggcaaat
cgccttggcctcaaggacgtcaacctgctggggctgcaggccaaatttgctccggttgaa
attgaagattccgaattggtggcgctcagccacaagatcccaggtcttcgctacctcaag
acctcaaaacttttaacgctgccatcgcctagttcgagtgttggcgagagcctgagcgac
caagagctgattgactggatgtggaagatttttcagatcgtttttgccaaaggggagaag
tga
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