Ascochyta rabiei: EKO05_0004809
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Entry
EKO05_0004809 CDS
T09445
Name
(RefSeq) uncharacterized protein
KO
K12878
THO complex subunit 1
Organism
arab
Ascochyta rabiei
Pathway
arab03013
Nucleocytoplasmic transport
arab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EKO05_0004809
09122 Translation
03013 Nucleocytoplasmic transport
EKO05_0004809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0004809
03041 Spliceosome [BR:
arab03041
]
EKO05_0004809
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
EKO05_0004809
Spliceosome [BR:
arab03041
]
Complex C
Other components
EJC/TREX
EKO05_0004809
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
EKO05_0004809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Htt_bridge
Motif
Other DBs
NCBI-GeneID:
62213564
NCBI-ProteinID:
XP_038799357
LinkDB
All DBs
Position
7:complement(join(739842..740202,740255..740568,740670..740822,740873..741484,741531..741649,741701..741779,741824..742051))
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AA seq
621 aa
AA seq
DB search
MAVPVADAPQVSTSARLDELLKRARSVKPSTTIEPSLQVSELVPDNGPLFSDINGEKDVL
STAVESAAKRIFYANIGLTSIDEPAFITVWNLLDILQYCGDRDICSAQLVLLLIEELLDS
QSLAQCRTVFSFLESRREAIIAISSQNKSLVILRLCNELLRRLSRAEDPVFCGRVYIFMF
QSFPLGDKSSVNLRGNFHVENVTTFEEPLNGSGAEEDSMQVDDDETTPTIKTTAESEDSP
TTPSGFRKGNEIPPKTLDIDTLYPVFWSLQHSFSNPPRLFEENNFKEFRSSLEATLAKFK
EVPKVIQAGDIGRKKGPKPSSDDSYDAFANTFNPKYLTSRDLFKLELSDLAFQRHILVQA
LILVDFLLTLTEKAKSKPLYQNAQKAMQYHFTMREQDTEWALGIKNAIANYLQEGPDGKF
YYRMVDTVLSRDKNWVRWKMENCQPFTRNRVDIAEVISSKSDAVRAISKKRPNEPTGVSS
SLNFLYNTEAEKGLSQLRQHDRFNAPSAETYARKVKMVDLDLEMANTDADKREAEEKKSS
YIWRGLRTASQKQLSSFDKIDHGKGLEALQPVPPQTEIAGDDTAATAAQDRGTAPQEEEE
HSVEELRAEQRSQVTADTEMK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggcagtaccagttgcggatgcacctcaagtcagcacctcagcaagactggacgaattg
ctaaaacgcgcgcgatccgtcaagccaagtactacaatcgagccttctcttcaggtttca
gagctagtgcctgacaatggacctcttttcagcgacatcaatggcgaaaaagatgtactc
tcaaccgcagttgagagtgcggcaaagaggattttctacgcaaacataggactgacaagc
attgacgagccagctttcataaccgtatggaacctgctcgatatcttgcagtactgtggt
gacagagatatatgctcagcacaattggtacttctgctcattgaagagctactggatagc
cagtcattggcacaatgtcggactgttttcagttttctcgaatctcggagagaggcaatt
attgcaatcagctcgcagaataaatctctggtcatactgaggctttgcaatgagctgctc
cgtcgattgtctcgtgcagaagaccctgtcttttgtggacgtgtctacatcttcatgttc
cagagcttcccactcggtgacaagagctcagtcaatcttcgcgggaacttccatgtggag
aatgtgacaaccttcgaagaacctttgaatggatcaggtgcagaagaagactctatgcaa
gtcgatgatgacgaaactacgcccacgatcaagacaacagcggagtcagaagattcgcca
acgacaccctcgggtttccgtaagggcaacgagatcccgcccaagacgctggacatcgac
acactctatcctgtcttttggtcgttacagcactcgttctcaaatcctccccgtttattc
gaggagaataacttcaaagagttccgaagcagtctggaggcgacgcttgcgaaattcaag
gaggtaccgaaggtgatacaagcaggggacattggacgcaagaaagggccaaagccttca
tcggacgatagctatgacgcgtttgcgaacacgttcaacccaaagtaccttacaagccgt
gatttgttcaagctcgagttaagcgacctcgctttccagcgccacatcctggttcaggct
ttgatactcgttgattttcttttgacgttaaccgagaaggcgaagagcaagccactctac
cagaatgcgcagaaagcgatgcagtaccacttcacaatgcgtgagcaggacaccgagtgg
gcattgggcatcaagaacgccattgcaaattacctgcaggagggtccggatggcaaattc
tactaccgcatggtagacaccgtgctctcccgtgacaagaactgggtaagatggaagatg
gaaaactgccaaccgttcactcggaaccgagtcgatatagcagaggtcatatcatccaag
tccgatgcggtgcgtgcgatctcgaagaaaaggccaaacgagcccacgggcgtgtccagc
tctctgaacttcttgtacaacacagaagcagagaagggactatcgcagctgaggcagcat
gatcgattcaatgcaccaagcgcagagacgtatgcaaggaaggtcaagatggtcgacttg
gacttagaaatggctaacacagatgccgataaacgtgaggcagaagagaagaagtccagc
tacatctggaggggtctccgtactgcttctcagaaacagttgagctcgttcgacaagatc
gaccacggtaaaggcctggaggctcttcagccggtccctcctcaaactgagattgcaggc
gacgacactgcagccacggcagcgcaagacaggggtaccgctccgcaagaagaagaagag
catagcgtcgaggagctgcgggccgagcaacgaagtcaagtgaccgcagacacagagatg
aagtag
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