Ascochyta rabiei: EKO05_0004817
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Entry
EKO05_0004817 CDS
T09445
Name
(RefSeq) RNA polymerase II transcription factor B 52 kDa subunit
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
arab
Ascochyta rabiei
Pathway
arab03022
Basal transcription factors
arab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
EKO05_0004817
09124 Replication and repair
03420 Nucleotide excision repair
EKO05_0004817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arab03021
]
EKO05_0004817
03400 DNA repair and recombination proteins [BR:
arab03400
]
EKO05_0004817
Transcription machinery [BR:
arab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
EKO05_0004817
DNA repair and recombination proteins [BR:
arab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
EKO05_0004817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
62213572
NCBI-ProteinID:
XP_038799365
LinkDB
All DBs
Position
7:join(766959..767085,767144..767682,767755..768492)
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AA seq
467 aa
AA seq
DB search
MSAPSSSQALEYLEGLPLQTHKKLYEAPATVLAVFRCMLPHLAKTLVMAMLYMPTSFPGA
QLEAWFKPGAKREREQAIFTLQRLHILDSTQEDDRSTSYTLSSGFQRSLRHALEGSGKDG
SFGVSATEEESRGERRVSIAFLDEHAQAQWETILFYMVGGAAGVTVKSDVSPGTKKLLHA
GDLVRSFHGAPRITKEGFTFVLQETNAQVWNLLIVYLKMVNDLGMNETDVLSFLFMLGSL
ELGQDYSTSTLSPTQLHMLDDLSAMGIVYRSSKNATVFYPTRLATTLTSDSGGLSTSGDS
TGSSSANQGFIIIETNYRLYAYTNSLIQIAIISLFCKLQHRFPNLISGKLTKESVHRAVS
QGITSQQIISYLTTYAHPQMQKNKTFIPPTVMDQIRLWEYEGERVETTNGYLMREFGSQA
EYADVLNYADALGVLVWKNDEKRTFFVSHVEQISAYLKKKKERMGPR
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgccatcctcgtcccaggcgctcgaatacctggagggcctgcctctgcagacg
cacaagaagctttatgaagcaccggcaacggtcctggctgtctttcgctgcatgttgccg
catctggcgaagaccctggtaatggccatgctatacatgcctacgtctttccctggggct
cagctcgaagcctggttcaaaccgggcgccaaacgtgaaagagagcaagccatcttcacc
ctccagcgcctccatatcctcgattcgacccaagaagacgatcgctcgacgtcatacacc
ctctcttcaggcttccagcgcagcctgcgacatgctctcgagggctcaggcaaagacggt
tcctttggtgtttctgcgacggaggaagagagcagaggcgagaggcgggtcagcatcgca
tttctagacgagcacgcacaggcgcagtgggagacgattctgttctacatggtcggcggt
gctgctggcgttacggtcaagtcggacgttagtcctgggacaaagaagctgcttcacgcc
ggagatctggttaggtcttttcacggggctccccgcatcacgaaggaaggcttcactttt
gtgctgcaagagacgaatgcacaggtctggaatctgctgatcgtgtacctgaaaatggtc
aacgatctcggtatgaacgaaaccgatgttctttcgttcctcttcatgctcggctctctc
gaactcggccaagactactcgacctcaaccctctcccctacacaactccacatgctggac
gatctctctgcaatgggcatcgtctaccgctcctccaaaaacgccacagtcttctacccc
acccgcctcgccacaactctgacctcggattccggaggcctcagcacctcgggcgacagc
acaggcagtagcagcgccaaccaaggcttcatcatcatcgaaaccaactaccgcctctac
gcgtacacaaactcactcatccagatcgccatcatctcgctgttctgcaaactgcaacac
cgcttccccaacctgatctcaggaaaactgacaaaagaatccgtccaccgcgccgtctcc
cagggcatcacatcgcagcagatcatctcgtacctgacgacgtacgcacacccgcagatg
cagaagaacaagaccttcatcccgcccacggtcatggaccaaatccggctgtgggagtac
gagggcgagcgcgtcgagacgacaaacgggtacctgatgcgcgagtttggctcgcaggca
gagtacgcagatgtgctcaactacgccgacgcgctcggggtgctggtgtggaagaacgac
gagaagaggaccttcttcgtcagccatgtcgagcagatcagtgcctatctcaagaagaag
aaggagaggatggggccgcggtga
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