Ascochyta rabiei: EKO05_0007846
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Entry
EKO05_0007846 CDS
T09445
Name
(RefSeq) DNA ligase (ATP)
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
arab
Ascochyta rabiei
Pathway
arab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EKO05_0007846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arab03400
]
EKO05_0007846
Enzymes [BR:
arab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EKO05_0007846
DNA repair and recombination proteins [BR:
arab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
EKO05_0007846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
BRCT_2
RNA_ligase
DNA_ligase_A_C
BRCT
LIG3_BRCT
Bac_globin
Motif
Other DBs
NCBI-GeneID:
62215945
NCBI-ProteinID:
XP_038797017
LinkDB
All DBs
Position
13:complement(1040423..1043392)
Genome browser
AA seq
989 aa
AA seq
DB search
MGDDTSMPDAEAVRENTLMYGHDEELDEKYPTRPLNEHKTPPFHTLFTELFNPLMDTQKR
RHPVGPRRKTGPSGHSNLSPHEAKRNIIERFIKDWRKKVGNDFYPAMRLIIPEKDRDRAM
YGLKEKAIAKVLIKLTKISKDSDDAKQMLNWKLPGQLYKATSSTAGDFAGRCYEVLSTRQ
MRTQYSDMSIAEVNSALDKLSQVGSEDEQVKIFNRFYRRMNAEEMTWLIRMILRQMKIGA
TEKTFLDMWHPDAEQLFNISSNLRRVCWELYDPMIRLEGDDTGLSVMQCFQPQLAQFQDK
VGSFEKIVSRFQQNPDDDNFWIEEKLDGERMQLHMMEDPDAPGGRLFGFWSRKAKDYAYL
YGKHLEGEEAGALTRFIADAFGKNIRNIILDGEMITWDMETDHIVGFGTLKTAAISEKEN
KTNKSTGQRPLFRVFDCVYLNDKLLTPYMLRDRRRALEGAVKNVHRRLEVHPYIDARSHT
EVEPALRMVVAESSEGLVLKNPRSMYRLNERNNDWMKVKPEYMSEFGESLDCVVVGAYYG
SGHRGGAHSSFLCGLRVKQNAKPSDPDYEKCFSFFKVGGGFSREDYAAIRGRTEGKWKDW
DPKRPPPTIELGGHTENRQYERPDQWILSSDSVVLECKAASVEGSDKFRMGRTLRFPRFK
RLRIDKRWDQALSVHEWVELQVDVEQTLEEKQQEFKIEQSRRKKARVTKMPLVIAGDEAV
TTPYVGPESKVFEGLTFYIMTDQLHPIKKSKADLEALVKANGGRIVQRDLADRSLVIIAD
KRLIKVASLEKRNTNNIVKPIWLSDCIVQNEADVGALPYLLPFEPNRHMFFLHDNELDVT
EGNVDGNGDAYARDIGDVDEMRKLLGGMQKPRAKKNFDKQRFLNQLQGHREEVNKLRSYM
FVNIKVAFQVNEDPVWSLKTRMAANYIRFGGGSVVGKEAAKGITHIVAPDGEKGSSTKIT
DMARVVGVAWVEKCWEEGTMVDEERFQWG
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacgacaccagcatgcctgacgccgaggcagtgcgtgagaacacgctcatgtat
ggccacgacgaggagttggacgagaagtacccgactcggcccttgaatgagcacaagaca
ccgccattccacacgcttttcaccgagctgttcaatccactcatggatactcagaagagg
aggcatcctgttgggccccgccgaaaaactggtccgtcaggtcactcgaacctctcgccg
cacgaagccaagaggaacatcatcgaacgcttcatcaaagattggcgaaagaaggtcggc
aatgacttctacccagccatgcgactcatcatccctgaaaaagatcgagacagagctatg
tacggcctgaaagagaaggccatcgctaaggtcttgatcaaacttactaagatcagtaaa
gactcagacgatgcgaaacagatgctcaactggaagctacctggccagttgtacaaagcc
acctcttcgaccgctggtgattttgctggtcgctgctatgaagtcttatctacacgccag
atgcgtactcaatacagtgacatgagtattgctgaagtcaacagcgctttggacaagctg
tcgcaggtcggctcagaagatgagcaagtcaagatcttcaacagattctacaggaggatg
aatgctgaagagatgacttggctgatccgcatgatccttcgtcagatgaaaatcggagct
accgagaagaccttcctcgacatgtggcaccctgatgctgaacagcttttcaatatatcc
tcaaacctcagacgtgtatgctgggaactctacgacccaatgattcgacttgaaggtgat
gatacaggcctcagtgtaatgcaatgcttccagccgcaactagcacaattccaagacaag
gtcggctcattcgagaagatcgtatcacgattccaacagaaccctgacgatgacaatttc
tggattgaagagaagctcgacggtgaacgtatgcaacttcacatgatggaagatcccgac
gcgcccggcggaaggttattcggtttctggtcgcgcaaggcaaaggactatgcctacctc
tatggcaagcaccttgaaggcgaggaagcaggcgctttgacacgcttcatcgcagatgcg
ttcggcaagaacattcgcaacatcatccttgacggcgaaatgatcacctgggacatggag
acagaccacattgtcggctttggcacactgaagactgcagcaatatcagagaaggagaac
aagaccaacaagagcactggccagcgtcccctcttccgcgtgttcgattgcgtctatctg
aacgacaagctcttaacaccatacatgttacgcgaccgtcgtcgagcactagaaggtgcg
gttaagaatgttcatcgacgactggaagttcatccttatatcgacgcacgctcgcacact
gaagtcgaaccagcactgcgaatggtcgtggctgagtcttccgagggtctggtgctaaag
aaccctcggtccatgtatcgcctcaacgaacgtaataacgactggatgaaggtaaaacct
gagtacatgtctgaattcggcgaatcgcttgactgtgttgtggttggtgcctactatggc
tcaggtcatcggggcggcgctcattcttcctttttgtgcggattgcgcgtcaaacaaaat
gccaaacccagtgatccagactatgagaaatgcttctctttcttcaaagttggaggagga
ttcagccgcgaagattacgctgctatacgaggccgtacggaaggcaaatggaaagattgg
gatcctaagcgtccacctcctaccatcgagctcggtggtcacacagaaaaccgccaatac
gagcgtcccgaccaatggatcctttccagtgactctgtcgttcttgaatgtaaagcagcc
agcgtggaaggcagcgataagtttcgcatggggcgtacgctccgatttccacgcttcaag
cgcctccgcattgacaagcggtgggaccaagccctgagcgtccacgaatgggttgagcta
caggtcgatgttgagcaaactcttgaggagaaacagcaagagttcaagatcgagcagtcc
cgtcgcaagaaagccagggtcacaaagatgccgctcgtgattgcaggtgacgaagctgta
acgactccctatgtaggcccagagtcgaaagtatttgaaggtctgaccttctatatcatg
accgaccaactacaccctatcaagaagagtaaggctgacctcgaagcacttgtcaaagcc
aacggcgggaggatcgtgcagcgtgacttggccgacagaagtcttgtcattattgcagac
aagcggctcatcaaagtggcgtctctcgagaagcgaaacacaaacaacattgtcaaacct
atctggctgtctgactgtatagttcagaatgaagctgatgtcggtgctttgccgtaccta
ctgccattcgaaccaaaccgccacatgttcttcctccacgataatgaactggatgttaca
gaaggcaacgtagatgggaacggggacgcgtatgcgagagatatcggagatgtcgatgaa
atgagaaagttgcttggaggcatgcagaagccaagagcaaagaagaatttcgataagcaa
cgctttctcaatcagctccaaggtcacagagaagaagtcaacaagttgagaagctatatg
ttcgttaatatcaaggtcgccttccaagtcaatgaagaccctgtctggagtctcaagaca
agaatggcagcgaactacatccgctttggaggcggctcggtggttggaaaggaagctgca
aagggaatcacgcacatcgtcgctccagatggtgagaaggggagtagcacgaagatcact
gacatggcgagagtggtgggtgttgcatgggtggagaaatgctgggaagagggcacaatg
gtcgacgaagagaggttccagtggggatga
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integrated database retrieval system
