Rhizosphaericola mali: E0W69_001875
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Entry
E0W69_001875 CDS
T06233
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
arac
Rhizosphaericola mali
Pathway
arac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E0W69_001875 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arac03019
]
E0W69_001875 (rnr)
03016 Transfer RNA biogenesis [BR:
arac03016
]
E0W69_001875 (rnr)
Enzymes [BR:
arac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E0W69_001875 (rnr)
Messenger RNA biogenesis [BR:
arac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E0W69_001875 (rnr)
Transfer RNA biogenesis [BR:
arac03016
]
Prokaryotic type
tRNA degradation factors
E0W69_001875 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
OB_Dis3
S1
Motif
Other DBs
NCBI-ProteinID:
QES87461
UniProt:
A0A5P2G7G9
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All DBs
Position
complement(437008..439944)
Genome browser
AA seq
978 aa
AA seq
DB search
MSKSNNKKHKGSKYFGNSQRRAHNAPQRNTPTLSSHKGSLQITRSGMGFVILDKSEEGGD
VLVRPQDFNTAMNGDKVIVDIKKQNQQTGKREGKIARVLQRKQSEFIGTIEISPKFAFFI
PDGNKGLPDFYVPLSSIKDAKHQDKVIVKLVKWPENEKKPIGEVISVISQEDLNDIAMKS
LLMENGFPVQFDDEVLAEANKFSDKITTAELKKRKDFRKVTTFTIDPNDSKDFDDAISFK
KLRGGSFEIGVHIADVSHFVQPGTKLDEEAYKRATSVYLPDRVDPMLPERISNFLCSLRP
HEDKYTFSAVFNIDSNGKISKTWIGRTVIHSDKRFTYDDVQAIILGGDGDFKDEVLTINT
ISQALRAERFKHGAINFSSQEVRFKLDEKGLPIGIEVNESNESHQLIEELMLLANKAVAE
LAQKTKVKKEPIPFPYRIHDQPDELKLTPFIALAKKFGYQFDTSNPEKIAQSFNAMLTSL
EGKPESTMLQQLGIRTMAKAAYSPQNIGHYGLGFKDYCHFTSPIRRYPDVMVHRVIEEIL
EGKKNVDEKMEIKCKHCSERERASLECERAANKYKQVEYMQQFLGEKLEGIISGVSAFGF
WVETLEAKCEGLVSIKDLANFDDFNLIEEDYALVGLRSGRKFRMGDHVWIRVVATNLEKR
QIDFEWLPNANIQTETKVVAIENILPKEHKVAPTINNATKTKPKPTFDPKKKPTIKTESK
KLVSDNTAKATSLPKKPVQKVSVKNIPIEKAVTKAVEKSTVANKTEKKKAPTKISKEKKT
PIIDTVSASTSKKTIIKSKKSSENKEIIAPASKEALAQKSVTKAPIKKAKIEQTTKKVVK
SLPINSKKVVKKATPEKEKAITKAVKIKETKSTPQTKKAEKQKSADKKVVAKAPAPKKEA
SKKTPTTTKKLSSTAAPIAKVLKTKETKSTSQIKIAEKKTSPAKKVVDKTNKKIATPKTE
VASNKTNKTVKTKAGKKI
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagagtaataataaaaaacataaaggatcaaaatatttcggaaatagtcaaaga
cgagcgcacaatgcgccacagcgtaatactcctaccctttcatcgcacaaaggatctttg
cagatcactcgctccggaatgggttttgtcattttggataaatcagaagaaggtggtgac
gttttagtccgtccacaagattttaatacggcgatgaacggcgacaaagttattgtcgat
atcaaaaaacaaaaccaacaaactggaaaacgcgaaggaaaaattgctcgcgtattgcaa
agaaaacaatcagaatttataggaactatcgagatttctcccaaatttgcctttttcatt
cctgatggaaataaaggcttacctgatttctacgttccgctaagtagcataaaagatgcg
aaacatcaagataaagtgatcgtcaaattggtcaaatggccagaaaatgaaaagaaacca
attggcgaagttatttctgtcattagccaagaagacttgaacgatattgcgatgaaatct
ttgttgatggaaaatggttttccggtacaattcgatgacgaagttttggcggaagcaaac
aaattttcagataaaatcaccacggccgaacttaaaaagcgaaaagattttagaaaagta
accacatttaccattgacccaaatgactccaaagattttgatgatgccatttccttcaaa
aaattacgtggcggttcatttgaaatcggagtacatattgcggatgtcagtcatttcgtt
caacctggaaccaaattggacgaagaagcctacaaaagagcgacttccgtatatcttcca
gatcgcgtagacccgatgttgccagagcgtatttctaattttctttgttcgctaagaccg
cacgaagacaaatacacgttctctgcggtattcaatatcgatagcaacggaaaaatatcc
aaaacttggatcggaaggacagtcattcattcagataaaagattcacatatgacgacgta
caagccatcattttaggcggtgacggcgattttaaagatgaagttttaaccatcaatacc
atttctcaagccttaagagcagaaagatttaaacatggagcgattaatttttcttcacaa
gaagtaagattcaaattagatgaaaaagggttgcccatcggtattgaagtaaatgaaagc
aatgaatcacatcaattgatcgaagaattaatgcttttggcaaataaagccgttgctgaa
ttggcacaaaaaacgaaagttaaaaaagagccgatcccattcccatatcgtattcatgat
caaccagatgagttaaaattgacaccatttatcgcattagcgaagaaatttggttatcaa
tttgacacgtccaatcctgaaaaaattgcacaaagtttcaatgcaatgttgacgtcttta
gaaggcaaaccagaatctacgatgttgcaacaactagggattcgtactatggcaaaagcg
gcatattcgcctcaaaatattgggcactacggtttaggattcaaagattattgtcatttc
acctcccctatcagacgttatcccgatgttatggtgcatcgtgtaatcgaggaaattttg
gaaggtaaaaagaatgtcgatgaaaaaatggagatcaaatgtaaacattgtagtgagcgt
gaacgcgcctctctagagtgtgagcgtgcggcaaataagtacaagcaggtagaatatatg
caacaattcttaggtgaaaagttggaaggtattattagtggtgtttctgcattcggattt
tgggtggagactttggaagcaaaatgtgaaggtttagtaagcattaaagatttggcaaat
tttgatgatttcaatttgatcgaggaagattatgccttagtaggattgagaagcggtaga
aaattccgtatgggagatcacgtttggatacgtgttgttgcgactaatttggaaaaaaga
caaattgattttgaatggttaccaaacgcaaatattcaaactgagacgaaggtggttgct
attgaaaatattttacctaaagaacataaagttgctcctacgattaacaatgcgactaaa
acaaaacccaaacctacatttgatccgaaaaagaaacccacaattaaaacagagtctaaa
aaattagtatctgacaatacagcaaaagcaacaagccttcccaaaaagccagtacaaaaa
gtctctgttaaaaatataccgattgaaaaagccgtcacaaaagcagttgaaaaatcaaca
gtagcaaataaaactgaaaagaaaaaggcgccaactaaaattagcaaggaaaagaaaacg
ccaattattgatactgtatctgcttctacttcaaagaaaacgataattaaaagcaaaaag
agttctgaaaataaagagattattgcccccgcatccaaagaggcattagcccaaaaatca
gttactaaagctccaattaagaaagctaaaattgaacagacaacgaaaaaagtggtaaaa
tctttacccatcaattcgaaaaaagttgtcaaaaaagcaacgccagaaaaagaaaaagcg
attacaaaagcggtcaaaataaaagaaacaaaatctactccgcaaacaaaaaaagcggag
aagcaaaaaagcgccgataaaaaagtagtggcaaaagcgccagctcctaaaaaagaagca
agcaaaaaaactcctactactactaaaaaattaagttcaacagcggctccaattgcaaaa
gtgttaaaaacaaaagaaacaaaatctacttcgcaaataaaaatagcagaaaagaaaaca
agccctgctaaaaaagtagtagacaaaacaaataaaaaaattgcaacgccaaaaacggag
gttgcaagcaataaaacgaataaaaccgtaaaaacaaaagcaggaaaaaagatataa
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