Arachidicoccus sp. BS20: A9P82_12295
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Entry
A9P82_12295 CDS
T04406
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arb
Arachidicoccus sp. BS20
Pathway
arb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A9P82_12295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arb03400
]
A9P82_12295
Enzymes [BR:
arb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A9P82_12295
DNA repair and recombination proteins [BR:
arb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A9P82_12295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
SBP_bac_3
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANI90770
UniProt:
A0A191TQ05
LinkDB
All DBs
Position
complement(2814046..2817459)
Genome browser
AA seq
1137 aa
AA seq
DB search
MNLQTLLGKYNNFPRLKQLADRLLLSKSEKIFLQNLKGSSAEFLAASVFQHEALKNFNHV
FVLNDSEEAAYFHNTLENLTGALNLFYFPSSFKNRKNFQLLNSSHIMLRTEALTRFSAPT
GERTGAMITYPEALFEKVVLPKTLSGNIIHIKVNDTLNVDSLMELFVDYGFVRTDFVYEP
GQFALRGGILDIYSFGNDKPYRVELFGNDVDSIRLFDPETQLSERKLLQVSIIPNVETQF
DDEEKISLFNFLPENTIIWLKDWDVIAEQITRQNLDLQDFLDKKDNENFVEEINDEFEET
KILKNINQDDFLSSEIIKEEILERTIIEFGYQPHFSLLTSDFFTKEQPSFNRNFDLLIKD
LKSYESKKYDIYLFSEQAKQLERLRSIFTDLNTEIQFTPLAVSIHEGFIDDDLKIVCYTD
HQIFQRYHKYHIRQAYNKSKALSLKTLRDMQPGDFVTHIDHGVGRYSGLQKIESNGSIQE
AVRIIYRDNDILYVNINSLHKISKYTGKEGTEPKINKLGSDVWNKLKEKTKTRVKEIAFD
LIKLYAERKAQKGFAFSPDNYMQTELEASFIYEDTPDQSKATADVKRDMESPAPMDRLVC
GDVGFGKTEVAIRAAFKAVVDGKQVAVLVPTTILAYQHFQTFSERLKEFAVTVDFINRFK
TAKEKKETLQKLAEGKIDIIIGTHAVLGKDVKFKDLGLMVIDEEQKFGVAHKEKLKTLRT
NVDSLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPIQTEVQVFSHDFVRDAIYFEIE
RGGQVFFVYNRVQGVKEMSALIQQLCPDLSVTYAHGQMDGKELEGKILDFIERKYDVLVC
TNIVESGVDIPNVNTIIINNAHHFGLSDLHQLRGRVGRNNKKAFCYLLAPPMSTLPADSR
KRLQTLEQFSELGSGFQIAMRDLDIRGAGNLLGGEQTGFMAEIGFEMYQKVLEEAIRELK
RTDFKDLFKEEISKQDDFVSDCTIDTDQEILIPDSYVENITERLALYTRLDHYQNEEELQ
HFRQELIDRFGAIPQQVEDLFSVIKSRELAIGLGFEKMTLKENVLRCFFINKNDSPYFES
DTFKNILDYLQTGTNKARLKQIGTNFLLIVNDVKNADEMLRFLQKMWSSVSRKETSK
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgaacctacagacacttctcgggaagtacaacaattttccccgcctgaaacagttggcg
gacaggcttttactgtccaaatccgaaaaaatatttttacagaatttaaaaggcagttcc
gctgaattccttgctgcatcagtatttcagcacgaagcattgaaaaatttcaaccatgtt
tttgtactgaacgattcagaggaagccgcgtatttccacaacactttggaaaatcttaca
ggcgcgttgaacctgttttattttccgtcttctttcaaaaacagaaagaattttcaactg
ctcaattcgtcgcacatcatgctacggacagaggcattgacaagattttctgcgccaacg
ggcgaacgcaccggcgcgatgattacttatcccgaagcgttgtttgaaaaagtagtgctg
cccaaaacgttgagcggaaatattattcatatcaaagtaaacgacactttgaatgttgat
agtttaatggaattgttcgtcgattacggttttgtgcgaaccgattttgtgtacgaaccc
ggacagtttgctttgcgcggcggcattttggatatttattcgttcggaaatgacaagcct
tatcgtgtggagcttttcggcaacgatgtggacagcattcgtttgtttgatccggaaaca
caattgagcgagcgtaagctgttgcaggtttcgattataccaaatgtagaaacacaattt
gatgatgaagaaaaaatttctttgttcaattttcttcccgaaaacacgattatctggctg
aaagactgggacgtaattgcggagcaaatcactcgtcagaacttggatttgcaggacttc
ttggataaaaaggataatgaaaattttgtcgaagaaatcaacgatgaatttgaagaaaca
aagattttaaagaatattaatcaagatgattttctctcttcagaaattatcaaagaagaa
attttagaaagaacgattattgagtttggctaccaaccacacttctctcttctaacttct
gacttcttcacaaaagagcagccttcgtttaaccgcaatttcgatttgctgattaaagat
ttaaagtcttacgaaagtaagaaatacgatatttatcttttctcggaacaagcaaaacaa
cttgaaaggttaaggagcatttttacggatttgaataccgaaattcaattcacgccattg
gctgtcagcattcacgaaggctttattgacgatgacttaaaaatcgtttgctacaccgac
caccagatttttcagcgttatcataagtatcatatccgtcaggcgtacaacaagagcaaa
gccttgtcgttaaagactttgcgcgatatgcagcccggcgattttgttacacatatcgac
cacggcgtcggtcgttacagcggtttgcaaaaaatcgaaagtaacggcagcattcaggaa
gcggtgcgtattatttaccgcgacaatgatattttgtatgtgaatattaattcgctgcac
aagatttcaaagtacacgggcaaagaaggaaccgaaccgaaaatcaacaagctcggcagc
gatgtctggaacaagctgaaagaaaaaaccaagacgcgcgttaaagaaattgcattcgat
ttaatcaaattatatgcggaacgaaaagcgcaaaaaggctttgccttttcgcccgacaat
tatatgcagaccgaattggaagcgagctttatttatgaagatacgcccgaccaaagcaaa
gccactgccgatgtaaaacgcgatatggaaagtcccgcaccaatggacagattggtttgc
ggcgatgtgggtttcggaaagacggaagtggctatccgcgcggcttttaaggctgttgtg
gatggaaaacaagtggcggttttagtgccgacgactattcttgcctatcagcattttcaa
acattttcggaacggctaaaagagtttgccgttacggtcgattttatcaatcgctttaaa
acggcgaaagagaaaaaagaaactttacaaaaattagccgaaggaaaaattgacataatt
attggtacgcacgctgttctcggaaaggatgtgaaattcaaagatttaggcttgatggtt
attgatgaagaacaaaagtttggcgtggcgcacaaagaaaaattaaagactttgcgcacc
aatgtagatagccttacattgactgcaacgcccattccgcgtacattacagttcagtttg
atgggcgcgagagatttatcaatcatcaatacgccgccgccaaatcgccaaccgattcaa
accgaagtacaggtcttttcgcacgattttgtacgcgatgccatctattttgaaatcgag
cgcggcggacaggttttctttgtttacaatcgtgtgcagggcgtaaaagaaatgagtgct
ttgatacaacagctttgtcccgatttaagtgttacttatgctcacggacaaatggatgga
aaagaattggaaggaaaaatattggattttattgagcggaaatacgatgtattggtttgt
accaatattgttgaaagcggcgtggacattccgaatgtgaacacgattatcatcaacaat
gcgcatcatttcgggttgagcgatttgcatcagttacgcggtcgtgttgggcgaaataat
aaaaaagcattttgttatttgttagctccgccgatgagcactttacctgccgattcgcga
aaacgcctgcaaacattggaacagtttagcgagttgggaagcggcttccagattgcgatg
cgcgatttggatattcgcggtgcgggaaatttgttgggcggagaacaaacgggtttcatg
gctgaaatcggttttgaaatgtaccaaaaagttttggaagaagccattcgcgaactcaag
cgcacagactttaaggatttgttcaaagaagaaatttccaagcaagacgattttgtttcc
gattgcacgattgataccgaccaggagattttaattcccgatagttatgttgaaaatata
acggaacgtttggcgctttatacaagactcgaccattatcagaatgaagaagaactgcaa
cattttcgtcaggaattaattgatagatttggcgcaattccgcaacaggtggaagattta
ttttccgtaatcaaatcgcgggaactcgctattggcttaggttttgagaaaatgacgctg
aaagaaaatgtattgcgctgtttcttcatcaacaaaaacgattcgccgtattttgaaagc
gatacgtttaaaaatatccttgattatttgcaaacaggaacgaacaaagcgaggttgaaa
caaataggcaccaactttttgctgattgtgaatgatgtaaaaaatgccgatgaaatgctt
cgttttttacaaaaaatgtggtcttccgtatcacgtaaagaaacttccaaataa
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