Arthrobacter sp. ERGS1 01: AL755_06280
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Entry
AL755_06280 CDS
T04085
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
are
Arthrobacter sp. ERGS1:01
Pathway
are03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
are00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL755_06280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
are03400
]
AL755_06280
Enzymes [BR:
are01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL755_06280
DNA repair and recombination proteins [BR:
are03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AL755_06280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALE05177
UniProt:
A0A0M4LMU7
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All DBs
Position
513168..516827
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AA seq
1219 aa
AA seq
DB search
MSLEGLRTALAADPLFARVRSYAATSTAERSTDLAFSAPAGMRPVLLAEMADGLAVAADG
GAGVVLAVTATGREAEDTVAALRSFLPADAVAEFPSWETLPHERLSPRSDTVGRRLAVLR
RLAHPELDAGGQLRVVVAPIRAVVQPIVAGLGELAPVHVKVGEEIGFTELVKQLADAAYA
RVDMVTHRGEFAVRGGILDVFPPTENHPIRIEFFGDEVDAMRWFSVADQRSLSSKVSTSS
TTGGIAHPTELYAPPCREILITPTVMGRAAKLKNSMPAAAAMLEKIAGGIAVEGMESLAP
ALVDGMVALTSLFPAGSVAVVLEPEKVRARAHDLESTNEEFLEAAWSTASDGGDAPLDLA
GHGVDLAAASFKSLAETREAALGDEVAWWSITSLTQDEELLPETDVVNLHAREPRGYRGD
VAEMMEFIGSRVKDQWRVVVATEGPGPAQRLAELFHEANIPASRVDSLDAEPQPGIIEVT
TADVGRGFVLDSLKLGLLTEADLLGRASAVSTKDMRKLPSKRRNVVDPLQLRAGDFVVHE
QHGVGKFVELIQRKVAGAGVGGAVGLREYLVLEYAPSKRGAPGDKLFVPTDQLDQVTAYV
GGDAPVLSKMGGSDWAATKSKARKAVKEIAGELIRLYSARMASKGHAFGPDTPWQAELEE
AFPYVETPDQLVAINEVKADMEKEVPMDRLISGDVGYGKTEIAVRAAFKAVQDGKQVAVL
VPTTLLAQQHYETFNERFSGFPVRVAPLSRFQTAKESKEIMEGVRTGSVDVVIGTHRLLS
KDFGFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSMTGIRETST
LATPPEERHPVLTYVGGYTDKQVGAAIRRELMREGQVFYVHNRVKSIERTAAHIQQLVPD
ARVAVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVEQANNYGLSQ
LHQLRGRVGRGRERAYAYFLYPADKPLGEVALERLKAVAAHNELGAGMALAMKDLEIRGA
GNLLGGEQSGHIQGVGFDLYIRLVGEAVAEFRGGGEERAAEMKIELPVNAHLPHDYVPGE
RLRLEAYRKLAAAVTIAEIDDVVAELVDRYGELPAAAVNLIAVARFKVHARTAGLSDVAL
QGNFIKFAPADLPESKVMRLNRMYPGAMVKPALDAILIPKPKTARIGGRDLADAEVLSWA
EGVLEAIFDVAPAAVATPA
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttgaaggtctgcgcacagcccttgccgccgatccgctgtttgcccgcgtgcgc
agctatgcggccacctcaaccgccgaacgcagcaccgacctcgccttcagcgccccggcc
ggcatgcgcccggtgctcctggccgagatggccgacggcctggccgtggcggccgacggc
ggcgccggggtggtcctggccgtcaccgccacggggcgcgaggccgaggacaccgtggcc
gcgctgcgctccttcctgccggccgacgccgtggccgaattccccagctgggagaccctg
ccgcatgaacggctgtcgccgcgatcggacaccgtgggccgccgcctggccgtgctccgc
agactggcacacccggagctcgacgccggtgggcagctgcgcgtggtggtggcacccatc
cgcgccgtggtgcagccgatcgtcgccgggctcggcgagctggcgcccgtgcatgtaaag
gtgggggaggagatcggcttcaccgagctcgtcaagcagctggccgacgccgcctacgcc
cgcgtggacatggtgacgcatcgcggcgaattcgccgtccgcggcggcatcctggacgtc
ttcccgcccaccgaaaaccaccccatccgcatcgagttctttggcgacgaggtggatgcg
atgcgctggttctccgtggccgaccagcgctcgctgtcctccaaggtctcgacaagctcg
accaccggcgggatcgcccaccccaccgagctgtacgcgccgccatgccgggaaatcctg
atcacgcccaccgtcatgggccgcgccgccaagctgaagaacagcatgccggcagcagcc
gccatgctggaaaagatcgccggcggcattgccgtggagggaatggaatccctggctccg
gcgctcgtggacggcatggtggccctgacctcgctgttccccgcgggctccgtggccgtg
gtgctggaaccggaaaaggtccgggcccgcgcgcacgacctggagtccaccaacgaggag
ttcctcgaggccgcctggtccacggcgtccgacggcggcgacgcaccccttgacctggcc
gggcacggcgtggacctggccgccgcaagcttcaagtcgctggccgagacccgggaggcc
gccctgggagacgaggtggcctggtggtccatcacctcgctgacccaggacgaggaactg
ctccccgagacggacgtggtgaacctgcacgcccgcgaaccgcgcggctaccgcggcgac
gtggccgagatgatggaattcatcggctcccgcgtgaaggaccagtggcgcgtggtggtc
gccaccgagggtcccggcccggcccagcgcctggccgagctgttccacgaagccaacatc
ccggcgtcgcgcgtggactccctggatgcggagccgcagccgggcatcatcgaggtgacc
acggccgacgtcggtcgcggcttcgtgctcgactccctcaagctggggctgctgaccgag
gcggacctgctgggccgggcgtcggcggtctccaccaaggacatgcgcaagctgccctcc
aaacggcgtaacgtggtggacccgctgcaactgcgcgccggcgatttcgtggtccacgaa
cagcacggcgtgggcaagttcgtggagctgatccagcgcaaggtggccggcgccggtgtt
ggcggggccgtcgggctgcgcgaatacctggtgctcgaatatgcgccgtccaagcgcggc
gcgcccggcgacaagctgttcgtgcccacggaccagctggaccaggtgacggcgtatgtg
ggcggcgacgcgcccgtgctctccaagatgggcggctccgactgggccgccaccaagagc
aaggcccgcaaggctgtcaaggaaatcgccggggaactgatccggctgtactccgcgcgc
atggcctccaaggggcacgcgtttggacccgacacgccctggcaggccgagctcgaggag
gcattcccctatgtggagacgcccgaccagctcgtggcgatcaacgaggtcaaggcggac
atggagaaggaggtccccatggaccggctgatctccggcgacgtgggctacggcaagacc
gagatcgccgtgcgcgccgcgttcaaggccgtccaggacggcaagcaggtggccgtgctg
gtgcccaccacgctgctcgcccaacagcactacgagacgttcaacgaacgcttctccggc
ttcccggtccgggtggcgccgctgtcgcgcttccagaccgccaaggaatccaaggagatc
atggagggcgtgcgcaccggctccgtggacgtggtgatcggcacgcaccggctcctctcc
aaggacttcggcttcaaagacctgggcctggttattgtcgatgaggagcagcgcttcggt
gtggaacacaaggaggcgctgaagaagatgcgcaccaacgtggacgtactggccatgagc
gccacgcccatcccgcgcaccctggagatgtccatgacgggcatccgcgaaacctcaacc
ctggccaccccgccggaggaacgccaccccgtgctgacctatgtgggcggctacacggac
aagcaggtgggcgccgccatccggcgcgaactcatgcgcgagggccaggtgttctacgtc
cacaaccgggtcaagtccattgagcgcacggccgcgcacatccagcagctggtcccggac
gcccgcgtggccgtggcccacgggcagatgagcgagtcccggctggaacagatcatcgtg
gacttctgggaaaagcgtttcgacgtgttggtgtgcaccaccatcatcgaaaccggcctg
gacatctccaacgccaacacgctcatcgtggaacaggccaacaactacggcctctcccag
ctgcaccagctgcgcgggcgtgtgggccgcggccgtgaacgcgcctatgcgtacttcctg
tacccggccgacaagccgctcggcgaggtggcacttgaacgcctgaaggccgtggccgcg
cacaacgagctcggtgccggcatggcgctggccatgaaggacctggaaattcgcggcgcc
ggcaacctgctgggcggcgagcagtccggccacatccagggagtgggcttcgacctgtac
atccgcctggtgggcgaggccgtggccgagttccgtggcggtggcgaggagcgcgccgcc
gagatgaagatcgagctgcccgtcaacgcccacctgccgcatgactacgtgccgggggag
cggctgcgcctggaggcctaccgcaagctcgccgccgccgtcacgatcgccgagatcgac
gacgtcgtggccgagctggtggaccggtacggcgagctgccggccgccgccgtgaacctg
atcgccgtggcccgcttcaaggtccatgcccgtaccgccgggctctcggacgtggcgctg
cagggcaacttcatcaagttcgccccggcggacctgccggaatcgaaggtcatgaggctg
aaccgcatgtaccccggcgccatggtgaagcccgccctggacgcaatcctgatccccaag
cccaagacggcccggatcggcggccgcgacctggccgacgccgaggtgctcagctgggcc
gagggcgtgttggaggccatcttcgacgtcgccccggccgccgtggccacccccgcctga
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