Azospira restricta: IWH25_12450
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Entry
IWH25_12450 CDS
T07061
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ares
Azospira restricta
Pathway
ares03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ares00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IWH25_12450 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ares03400
]
IWH25_12450 (mfd)
Enzymes [BR:
ares01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IWH25_12450 (mfd)
DNA repair and recombination proteins [BR:
ares03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IWH25_12450 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
AroM
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QRJ62583
UniProt:
A0A974PWT7
LinkDB
All DBs
Position
complement(2576529..2579996)
Genome browser
AA seq
1155 aa
AA seq
DB search
MSPLPRLLPSLPPLPAAGQRLSLPALAGSADALALARLAGDAPGSLLVVLAAGPADAQRL
LEELPWFAPDLRVRLLPDWETLPYDSFSPHHDLVSERLATLYAVTRGECDILLLPASTAL
YRFAPPAYLAAYTFFLKKGDTLAADKLKAQMTLAGYAHVTQVVSPGEYSIRGGLIDLFPM
GSQLPYRIDLFDDEIESIKTFDVDSQRTLYPVPEIRLLPAREFPMDDAGRTRFRQRFREV
FEGDPAKSGIYKDVSSGIPSAGIEYWLPLFFEETATLFDYLPADAALCLHRDVPEAIRAF
WRDTQSRHRMLDGDRSRPLLPPGELFLSEEQFFVAAKPYARIDLPAGEDGDGGPARPLPP
IAVDRRADDPLRALKAFLDGYPGRVFLLAESAGRRETLTELLAEYGLKPDAVADPAAFLA
AGPKLGLGVAPLFAGFQLDGIAFVTEAELFAGSPSARARRSAREAQRKASFDNWLRDLTE
LKVGDPVVHEQHGIGRYQGLIHMNLGDGDTEFLELHYANESKLYVPVSQLHVISRYSGSE
PDAAPLHALGSQQWEKAKRKAAQQARDTAAELLALYASRAARQGHAFAFKAHDYDAFADG
FGFEETADQAAAIAAVIEDMKSGKPMDRLVCGDVGFGKTEVALRAAFCAVAGGKQVAVLC
PTTLLCEQHYQTFCDRFADWPVRIAELSRFKTAKESAQAMKELAEGKLDIVIGTHKLLSK
EMRFDRLGLVIIDEEHRFGVRQKEMLKSLRAEVDVLTLTATPIPRTLAMSLEGLRDFSVI
ATAPQKRLAIKTFVTRLSDGIIREAVLREMKRGGQVYFLHNEVDTIENMREKLTKLLPEA
RIVVGHGQMNERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQL
HQLRGRVGRSHHQAYAYLLTHDGTGEHSGLTKQAKQRLEAIQHMEELGSGFYLAMHDLEI
RGAGEVLGDSQSGEMQEVGFNLFTEMLNRAVAALKQGREPDLTQPLGVATEINLHTPALL
PNDYAPDVHERLSLYKRLANCDRTEDIDDLQEELIDRFGELPPQAQSLLATHRVRLLVKP
WCVGKLDATSEQIVVQFSPEFAKTAPIEPIRIINLIQKNRSYRLAGQDKLLFSRHSPTLN
DKVAAIKELFKQLTG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgctgccccgtctcctgccctcgctgccgccgctgcccgcggccggccagcgc
ctgtcattgcctgccctcgccggctcggccgacgcgctcgcgctcgcccgcctcgccggc
gacgcccccggcagcctgctggtggtgctcgccgccggcccggccgacgcgcagcgtctg
ctcgaggaactgccgtggttcgccccggacctgcgcgtgcgcctcttgccggactgggaa
acgctgccctacgacagcttctcgccgcaccacgacctcgtctccgagcgcctggcgaca
ctctacgcggtcacccgcggcgaatgcgacatcctgctgctgccggcgtccaccgcgctc
taccgcttcgcgccgcccgcctacctcgccgcctacaccttcttcctgaagaagggcgac
acgctcgccgccgacaagttgaaagcgcagatgacgctggccggctatgcgcacgtgacg
caggtggtgtcgcccggcgagtactcgatccgcggcgggctgatcgacctcttcccgatg
ggttcgcagctcccgtaccggatcgacctgttcgacgacgagatcgagagcatcaagacc
ttcgacgtcgacagccagcgcacgctgtacccggtgccggagatccgcctcttgccggcg
cgcgagttcccgatggacgacgccggccgtacccgcttccgccagcgtttccgcgaggtg
ttcgagggcgatccggcgaagtccggcatttacaaggacgtctccagcggcatcccctcg
gccggcatcgagtactggctgccgctgttcttcgaggagacggcgacgctgttcgactat
ctgccggcggacgccgcgctgtgcctgcaccgcgacgtgccggaggcgatccgcgccttc
tggcgcgacacccagtcacgccaccgcatgctcgacggcgaccgcagccggccgctgctg
ccgccgggcgagctgttcctgtccgaggaacagttcttcgtcgccgccaagccgtatgcg
cgcatcgacctgcccgccggcgaagacggcgatggcggcccggcccggccgctgccgcca
atcgccgtcgaccgccgcgccgacgatcctttgcgcgcgctgaaggccttcctcgacggc
taccccggccgcgtcttcctgctcgccgaatcggccggccgccgcgagacgctcaccgaa
ctgctcgccgaatacgggctgaaacccgacgccgtcgccgacccggcggccttcctcgcc
gccggcccgaagctgggcctcggcgtcgcgccgctgttcgccggcttccagctcgacggc
atcgccttcgtcaccgaggccgagctgttcgccggcagcccgtcggcgcgcgcccgccgc
tcggcgcgcgaggcacagcgcaaggcctcgttcgacaactggctcagggacctcaccgag
ctcaaggtcggcgacccggtcgtccacgagcagcacggcatcggccgctaccagggcctg
atccacatgaacctcggcgacggcgacaccgagttcctcgaactgcactacgccaacgaa
tcgaagctttacgtgccggtgtcgcaactgcacgtgatctcgcgctattccggcagcgag
ccggacgcggcgccgctgcacgcgctcggctcgcagcagtgggaaaaggccaagcgcaag
gctgcccagcaggcgcgcgacaccgccgccgagctgctggcgctgtatgccagccgcgcc
gcgcgccagggccacgccttcgccttcaaggcgcacgactacgacgccttcgccgacggc
ttcggcttcgaggaaaccgccgaccaggccgccgccatcgccgcggtgatcgaggacatg
aagtcgggcaagccgatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgccgccttctgcgccgtcgccggcggcaagcaggtggccgtgctgtgc
ccgacgacgctcctgtgcgagcagcactaccagaccttctgcgaccgcttcgccgactgg
ccggtgaggatcgccgaattgtcgcgcttcaagacggcgaaggaatcggcacaggcgatg
aaggagctggccgagggcaagctcgacatcgtcatcggcacgcacaagctgctgtccaag
gagatgcgcttcgaccggctgggcctcgtcatcatcgacgaggagcaccgcttcggcgtg
cgccagaaggagatgctgaagagcctgcgcgccgaggtcgacgtgctgacgctgacggcg
acgccgatcccgcgcacgctggcgatgtcgctcgaaggcctgcgcgatttctcggtgatc
gccacggcgccgcagaagcggctggcgatcaagaccttcgtcacgcgactctccgacggc
atcatccgcgaggcggtgctgcgcgagatgaagcgcggtggccaggtgtatttcctgcac
aacgaggtcgacaccatcgagaacatgcgcgagaagctgaccaagctcttgccggaagcg
cgcatcgtcgtcggccacgggcagatgaacgagcgcgagctggagcgcgtaatgcgcgac
ttcacgcagcagcgcgccaacctgctgctgtgcacgacgatcatcgagaccggcatcgac
aacccgcacgccaacaccatcctgatcaaccgcgccgagaaattcggcctggcgcaattg
caccagctgcgcggccgcgtcggccgctcgcaccaccaggcctacgcctatctccttacc
catgacggcaccggcgagcactccggcctgaccaagcaggcgaagcagcggctggaggcg
atccagcacatggaggagctcggctccggcttctacctggcgatgcacgacctggagatc
cgcggcgccggcgaggtgctcggcgacagccagtcgggcgagatgcaggaggtcggcttc
aacctgttcaccgagatgctgaaccgcgccgtcgccgcgctgaagcagggccgcgagccg
gacctcacgcagccgctcggcgtcgccaccgagatcaacctgcatacgccggcgctgctg
ccgaacgactacgcaccggacgtgcacgagcggctctcgctgtacaagcggctggccaac
tgcgaccggaccgaggacatcgacgacctgcaggaggagctgatcgaccgcttcggcgaa
ctgccgccgcaggcgcagtcgctcctggcgacgcaccgcgtgcgcctgctggtgaagccc
tggtgcgtcggcaaactcgatgcgacgagcgagcagatcgtcgtccagttcagcccggag
ttcgccaagacggcgccgatcgagccgatccggatcatcaacctgatccagaaaaatcgc
agctaccgcctcgccgggcaggacaagctgctattctcccggcattcaccgaccctgaac
gacaaggtcgccgcgatcaaggagctgttcaagcagctgaccggctga
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integrated database retrieval system
