Anaerostipes rhamnosivorans: AR1Y2_0855
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Entry
AR1Y2_0855 CDS
T05962
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arf
Anaerostipes rhamnosivorans
Pathway
arf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AR1Y2_0855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arf03400
]
AR1Y2_0855
Enzymes [BR:
arf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AR1Y2_0855
DNA repair and recombination proteins [BR:
arf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AR1Y2_0855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QCP34309
UniProt:
A0A4P8IGS1
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All DBs
Position
880792..881721
Genome browser
AA seq
309 aa
AA seq
DB search
MDIFQDRSASPMLIAHQGDPFDNPDWIYELKLDGFRCLAYMDKGGIDLRNKRNMSMLPKF
PELQYVYKQVRDQCILDGEVVVMRQGVPDFYELQRRTMLTDHFKIQMAAERFPASFVVYD
CLYSGGKSLLEESLLDRKLEIEKMIPAETKRMAISRYIRSEGIRLYEIAASQQLEGVVAK
NINSLYHMGKRSKDWVKFKRMADEDFVVAGYIRKAQNTYSIILGKYQKGILLYKGHVTSG
VTKYIIEELVPQGKSSISIFPVGSGNENAVWVTPDHVCIVQYMPNTKGALRQPVFKGFRT
DVDPRNIKV
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggatattttccaagacagatcagcttctcctatgttaatagcgcaccagggggatcct
ttcgacaatccagactggatttatgaacttaaactagatggttttcgctgcctcgcctat
atggacaaaggcggaatagatttaaggaataagagaaacatgagtatgttgcctaagttt
ccggagcttcagtacgtttataaacaggttcgggatcaatgtatattagacggtgaggtc
gtagtcatgaggcagggagtgccagacttttatgaattacaaagaagaactatgttaaca
gatcatttcaagattcagatggcagcagagagatttccggcttctttcgtagtatatgat
tgcttatacagtggaggaaaaagtttattagaagaatccttattagatcgaaaattggaa
atagaaaagatgattccggcagagactaaacggatggctatctcgagatatattaggagc
gaaggaatacgattatatgaaattgctgcctctcagcagttagaaggtgtcgttgcaaag
aatataaatagtttatatcatatggggaaacgctctaaggactgggtaaagttcaaacgc
atggcagacgaggacttcgttgtagcaggatatataagaaaagcgcagaatacttacagc
attatattagggaaatatcaaaaaggaatcttattgtacaagggacacgttacgagtggc
gtgacaaagtatattatagaagaattagtgccgcagggaaaaagctctatatccatcttt
ccggtcgggtctggtaatgaaaatgcagtctgggtaaccccggaccatgtttgcatcgtg
cagtatatgcctaatacaaaaggggccttgcgacagcctgtatttaaggggttccgtacg
gatgtagaccctagaaatataaaagtctaa
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