Arthrobacter sp. Hiyo8: AHiyo8_32040
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Entry
AHiyo8_32040 CDS
T04181
Name
(GenBank) putative DNA ligase-like protein Mb0963
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arh
Arthrobacter sp. Hiyo8
Pathway
arh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AHiyo8_32040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arh03400
]
AHiyo8_32040
Enzymes [BR:
arh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AHiyo8_32040
DNA repair and recombination proteins [BR:
arh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AHiyo8_32040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
LigD_N
Motif
Other DBs
NCBI-ProteinID:
BAS14901
UniProt:
A0A0K2RJ85
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All DBs
Position
2267517..2268932
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AA seq
471 aa
AA seq
DB search
MALPRGVPDTPDKNHLAVRTEDHPMEYAQFAGIIPKGEYGAGTVSIWDSGEFECEKWRDG
KEVIATLTGKPGGGLHGTRRFALIHTGESPSQWLIHLMKDKPGHRTVLLPDSRPQPIGTP
SYAPMLATSGTTADVSSGDWLFELKWDGFRAIVSGSGGKIRLTSRSGIDMTPTYPELADP
RYWPDHDFVADGEIVALSKNGRPSFELLQKRMNLFKPGDVERARAAVPVQLMVFDLLYDA
GSQGGADLTSLPLSERREKLAEFRAKLPAQGSPIHVSEILEHDLDDILATAGELGLEGVM
AKRADSRYQPGGAAGPGSSSSWNARRKWWWVAGGPAPGRGWDHWRVAGGDSRRRQAALRG
PGGHRVQGLATARHPEAPARSRSPGLSVPRHPGRGRRHGALGFARARGRGDVRRLDRRRE
NAPSRLARLAPRQVSRRRRARITQARTLTPPARNSAQLTGSRCRYEGSERH
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
gtggccttgccgcggggcgtgcccgacactccggacaagaaccacctcgcggtgcgcacg
gaggaccacccgatggagtatgcgcaattcgcgggcatcattccgaagggcgaatacggt
gccgggacggtcagcatctgggacagcggcgagttcgagtgcgaaaaatggcgcgacggc
aaggaagtcatcgctaccctcaccggaaagcccggcggcggattgcacgggacccgccgc
ttcgcgctcatccacaccggggagtcgccgtcgcaatggctgatccacctgatgaaggac
aaaccgggccatcggacggtgctgttgcctgactcccggccccaaccgatcgggaccccc
agctacgcgcccatgctcgcaacctccgggacaaccgccgatgtctcctccggcgactgg
ctgtttgagctcaagtgggacggtttccgggcgatcgtttcaggctcgggcggcaagatc
aggttgaccagccgctcggggatcgacatgacacccacctaccccgaactggcggatccg
cgctattggcctgaccacgacttcgtggcagatggcgaaatcgtcgcactcagcaagaac
ggccggcccagcttcgagctgctccagaagcggatgaacctcttcaaacccggcgacgtc
gaacgtgcccgggccgcggtccccgtgcagctcatggtgttcgatctcctgtacgacgcc
gggtcccaaggcggtgccgacctcacctccctgccgctcagcgagcgccgggaaaagcta
gcggagttccgcgccaagctgccggcccagggctcccctatccatgtgtccgagatcctg
gaacatgaccttgacgacatcctggccactgccggcgagcttggcttggagggcgtcatg
gccaagcgcgcggatagccggtaccagccgggcggcgcagcaggtcctggatcaagctca
agttggaacgcacgcaggaagtggtggtgggtggctggcggcccggctccggggcgaggc
tgggaccattggcgcgttgctggtggggattcccgacggcgacaagctgcgctacgcggg
ccgggtgggcacagggttcaaggactggcaactgcgcgacatcctgaagcgcctgcaagg
tctcgatcgcccggactctccgttccacgacatcccggccgaggacgccgccacggcgca
ctgggtttcgcccgagctcgtgggagaggtgacgttcggcgattggaccggcgccgagag
aatgcgccatcccgtctggcgcggctggcgccccgacaagtctcccgacgacgtcgagcg
cgcataacccaggcccgcacgcttacgcctcccgcacgtaactcagcccaactaactggc
agcagatgtcgttatgagggctcagaacgacattaa
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