Amycolatopsis rhabdoformis: VSH64_30825
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Entry
VSH64_30825 CDS
T09694
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VSH64_30825 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arhd03400
]
VSH64_30825 (mfd)
Enzymes [BR:
arhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VSH64_30825 (mfd)
DNA repair and recombination proteins [BR:
arhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VSH64_30825 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
WSE35261
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All DBs
Position
complement(6715874..6719437)
Genome browser
AA seq
1187 aa
AA seq
DB search
MSGLLQAILPDPALRGVVERAGAPLLELQGAVTARQLVAAALAEAETAGGAGRHVLAVTA
TGREADELTAALEALLGRDKVVDFPSWETLPHERLSPRADTVGRRLEVLHRLHQGDDELK
VVVSTVRSLIQPMAPGLGSLAPVDLVVGEEQSFEGLLDRLVELAYTRVDMVEKRGEFAVR
GGILDLFGPTAQHPVRVEFWGDEVSEIRAFAVSDQRSLPGEIQHVTAPPCRELLLTADVK
AKAAELAVTYEADAQLAEMLTKLAEGIPVEGMEALIPVLCAGELTLLTDALPRGSHVLLA
DPEKIRARAADLVRTGQEFLEASWTTAAAGGQAPIDLGASAYRDLAEIAAHAQDTKRSWW
TITQLSSEDPDVYRVGIEAAPAYRGEFERAMTDLRAHVAARGAGVLVVAGHGTATRAVEQ
LMTAEVPATLAGEGLVDVPPAGIVTVVCGALVDGFVSPERALVVLSEADLTGRGANAGTS
TKDLNAKMPSRRRNAVDPLALKAGDYVVHNQHGIGRFVEMVQRTVAGATREYLLLEYASS
KRGHPGDRLFVPTDQLDEVNRYVGGELPTLSKLGGSDWKNTKAKAKKAVKEIAAELVQLY
AARQAAPGHPFGPDTPWQGELEDAFPFQETNDQLAAIDEVKADMERGVPMDRVICGDVGY
GKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFTERMQSFPVTIKGLSRFTNKSES
DVILEQLAAGEVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVL
TMSATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGGYDDKQVGAAVRRELLRDGQV
FYVHNRVSSIEKAAKRIRELVPEARVVTAHGQMNEDKLEKIIQGFWENEYDVLVCTTIVE
TGLDISNANTLIVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPPETPLTETAHDRLAT
IAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAFRRHAGA
EPSEDEELAEVRVDLPVDAHIPHDYVEGERLRLEAYRKIAAAPDTAGLDAVREELIDRYG
QPPAPVTRLLAVAAFRHTCRAAGVTEVAVQGNTIRFAPLPLADSQMVRLKRLYPKATFKA
ITNTVSVPKPTEGPAGGRMGAPTLRDQELLDWCAKLLTQLTKTPATV
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
ctgtccggactcctccaagccatcctccccgacccggccctgcgcggggttgtcgaacgc
gccggcgccccgctgctcgagctgcagggcgccgtgaccgcgcgccagctggtcgccgcc
gcgcttgcggaggccgaaaccgcaggtggcgcgggccgccatgtgttggccgtcacggcc
accggccgtgaggccgatgagctcaccgcggcgctcgaagcgctgctcggccgggacaaa
gtggtcgacttcccgtcgtgggagacgttgccccacgagcgcctctcgccgcgggccgac
accgtcgggcggcggctcgaagtgctgcaccggctgcaccagggtgacgacgagctgaag
gtcgtcgtctccaccgttcgcagcctgatccagccgatggccccgggtctgggctcgctg
gcgccggtcgacctggtcgtgggtgaggagcagagcttcgaaggcctgctggatcgcctg
gtcgagctcgcgtacacgcgcgtggacatggtggagaagcgcggcgagttcgccgtgcgc
ggtggcatcctcgacctgttcgggcccaccgcgcagcaccccgtgcgcgtggagttctgg
ggcgacgaggtcagcgagatccgcgcgttcgcggtgtcggaccagcggtcgctgccgggc
gagatccagcacgtcaccgcgccgccgtgccgtgagctgctgctcacagccgatgtgaag
gccaaggccgccgagctcgccgtcacctacgaggccgacgcgcagctggccgaaatgctc
accaagctcgccgagggcatcccggtcgaaggcatggaagccctcatcccggtgctctgc
gcgggtgagctcacgctgctcaccgacgccctgccgcgcggcagccacgtgctgctcgcc
gacccggagaagatccgcgcccgcgccgccgacctcgtgcgcacgggccaggagttcctc
gaagcgtcgtggaccacggccgcggccggtggccaggcgccgatcgacctcggcgcgtcg
gcctaccgcgacctcgccgagatcgccgcccacgcgcaggacaccaagcgctcctggtgg
acgatcacacagctgagcagcgaagaccccgacgtctaccgcgtcggcatcgaggccgcg
cccgcgtaccgaggcgagttcgagcgcgcgatgaccgacctgcgtgcccacgtggccgct
cgcggcgccggcgtgctcgtcgtcgcgggccacggcacggcgacgcgcgccgtcgagcag
ctcatgaccgccgaggtgcccgcgacgctggccggcgaaggcctcgtcgacgtcccgccc
gcgggaatcgtcacggtcgtgtgcggcgccctcgtcgacggcttcgtctcacccgagcgt
gccctcgtggtgctgtcggaagccgacctcacgggtcgcggcgccaacgccggaacgtcc
acaaaggacctcaacgccaagatgccctcgcggcggcgcaacgccgtcgacccgctggcc
ctgaaggccggcgactacgtggtgcacaaccagcacggcatcggccgcttcgtcgagatg
gtgcagcgcaccgtcgccggcgccacgcgcgaatacctgctgctggaatacgcgagctcc
aagcgcggccaccccggcgaccgcctgttcgtgcccaccgaccagctcgacgaggtcaac
cgctacgtcggcggcgagctgcccacgctcagcaagctcggcggctccgactggaagaac
accaaggccaaggccaagaaggcggtcaaggagatcgcggccgagctcgtgcagctctac
gccgcgcgccaggccgcgcccggtcaccccttcggcccggacacgccgtggcagggcgag
ctcgaagacgcgttcccgttccaggagaccaacgaccagctcgccgccatcgacgaggtc
aaggccgacatggaacgcggcgtgcccatggaccgcgtgatctgcggcgacgtcggttac
ggcaagaccgagatcgccgtgcgcgccgcgttcaaggcggtgcaggacggcaagcaggtg
gccgtgctcgtgcccaccacgctgctcgcgcagcagcacctcaacaccttcaccgagcgc
atgcagtcgttcccggtcaccatcaagggcctttcgcggttcacgaacaagtccgagtcc
gacgtgatcctcgagcagctcgccgccggcgaggtcgacatcgtgatcggcacgcaccgc
ctgctgcagacgggtatccgctacaaggacctcggcctcgtgatcgtcgacgaggaacag
cgcttcggcgtggagcacaaggaacacatcaaggcgctgcgcacccacgtcgacgtgctc
accatgtcggccacgccgatcccgcgcacgctggagatgtcgctcgccggcatccgcgag
atgtccaccatcctcacgccgccggaagaccgccacccgatcctcacctacgtcggcggc
tacgacgacaagcaggtcggcgccgccgtccgccgcgagctgttgcgcgacggccaggtc
ttctacgtgcacaaccgcgtgtcgtccatcgagaaggccgcgaagcgcatccgcgaactg
gtgccggaagcgcgcgtggtcacggcccacggccagatgaacgaggacaagctcgaaaag
atcatccagggcttctgggaaaacgagtacgacgtgctcgtgtgcaccaccatcgtcgaa
accggcctcgacatctccaacgccaacaccctcatcgtcgaacgcggtgatctcctcggg
ctggcccagctgcaccagcttcgcggccgcgtgggccgtggccgcgaacgcggctacgcc
tacttcctgtacccgcccgaaaccccgctcacggaaaccgcccacgaccgcctcgccacg
atcgcccagaacaccgagctgggcgccggcatggccgtggccatgaaggacctggaaatc
cgcggcgccggcaacatcctcggcgccgaacagtccggccacatcgcgggcgtcggcttc
gacctgtacgtgcgcctggtcggcgaagcggtcgaagccttccgccgccacgcgggcgcc
gagccttccgaggacgaggaactcgcggaagtccgcgtcgacctccccgtcgacgcccac
atcccccacgactacgtcgaaggcgaacgcctccgcctggaggcctaccgcaagatcgcg
gccgcccccgacaccgccggcctcgacgcggtgcgcgaagaactcatcgaccgctacggc
cagccgcccgccccggtcacccgcctcctcgccgtcgccgccttccgccacacctgccgc
gcggccggtgtcacggaggttgccgtgcagggcaacaccatccgcttcgcacccctgccg
ctcgcggattcgcagatggtgcggctcaagcgcctgtacccgaaggcgaccttcaaggcc
atcacgaacacggtctcggtccccaaacccacggagggcccggccggcggccgcatgggc
gcgccgacgctacgcgaccaggaactgctcgactggtgcgcgaagctgctgacccagctc
acgaaaacacccgcgaccgtgtga
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