Amycolatopsis rhabdoformis: VSH64_44640
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Entry
VSH64_44640 CDS
T09694
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VSH64_44640 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arhd03400
]
VSH64_44640 (ligD)
Enzymes [BR:
arhd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VSH64_44640 (ligD)
DNA repair and recombination proteins [BR:
arhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VSH64_44640 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
DUF2268
Motif
Other DBs
NCBI-ProteinID:
WSE29805
LinkDB
All DBs
Position
complement(9576883..9578469)
Genome browser
AA seq
528 aa
AA seq
DB search
MDSAAQRLKKYREMRDFERTAEPAGADAAASPGNRFVVQRHRARRRHYDLRLELSGVLIS
WAVPKGPTLDPKVRRMAVHVEDHPLEYADFEGVIPRGEYGGGDVIVWDRGTWEAVDTDDP
EQALADGNLHFDLFGEKLAGRFVLIHPSRDGDGKQWLLLHKQDDHATAGWDAEDHPKSVK
SGLTNDEIKAAPPALWRGDLPAAEAEQKLKPVFRPASEAELDALGELGMKGSWAVAGRKL
ALTNLDKVLVPGRDGEDPITKRELIRYYTRVGPTMLPYLANRALNTNRFPGGIEKPGFWH
KEVPDHAPKWLHRWHYEEADADDVQQYLVPEGVADLAWLANFGALELHAWTSRIEDVEHP
TWTLFDIDPGPETSFDDVLALARLHRTALEHLGLVGLPKVTGQRGIQVWVPVEPRYTYAE
TRKWAETVSKTIGRTLPDLVSWAWHKDRRGGKARLDYTQNVLNKTLVAPYSVRPRVGAPV
SVPLRWEELDDPELTPDHWTIRTVLDRIEDVGDPFETLLGVEQQLPEL
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggactctgcggcgcagcggctcaagaagtaccgggagatgcgcgacttcgagcgcacc
gccgagcccgcgggcgccgacgcggccgcctcgccgggaaaccgcttcgtggtgcaacgc
caccgcgcgcgtcgccggcactacgacctgcggctcgaactgagcggtgtgctcatcagc
tgggccgtgccgaagggtccgacgctcgaccccaaggtgcggcgcatggccgtgcacgtg
gaggaccacccgctcgaatacgccgatttcgagggcgtgatcccgcgcggcgagtacggc
ggcggcgacgtgatcgtgtgggaccgcggcacctgggaggccgtggacaccgacgacccc
gagcaggcgctggccgacggcaacctgcacttcgacctgttcggcgaaaagctcgccggc
cggttcgtgctcatccaccccagccgcgacggcgacggcaagcagtggctgctgctgcac
aagcaggacgaccacgccactgccggctgggacgccgaggaccacccgaagtcggtgaag
agcgggctcaccaacgacgagatcaaggccgctcccccggcgttgtggcgcggcgacctg
cccgccgccgaggcggagcagaagctcaagccggtgttccggcccgcgtccgaggccgag
ctcgacgcgctcggcgagctgggcatgaagggctcctgggccgtcgcgggccgcaagctc
gcgctcaccaacctcgacaaggtgctcgtgcccgggcgggacggcgaagacccgatcacc
aaacgcgagctgatccgctactacacgcgcgtcggcccgacgatgctgccctacctcgcg
aaccgcgcgctcaacaccaaccggtttcccggcggcatcgagaaacccggcttctggcac
aaggaagtgcccgaccacgcgccgaagtggctgcaccgctggcactacgaggaagccgac
gccgacgacgtgcagcagtacctcgtgcccgagggcgtcgcggatctggcgtggctggcc
aacttcggcgcactcgagctgcacgcgtggacgtcgcggatcgaggacgtcgagcacccc
acgtggacgctgttcgacatcgaccccgggccggagacgtcgttcgacgacgtgctcgcc
ctcgcgcgcctgcaccgcaccgcgctggagcacctcgggctcgtcgggctgccgaaggtg
acggggcagcgcgggatccaggtgtgggttccggtggaaccgcgctacacgtatgcggag
acgcgcaagtgggccgagaccgtgtcgaagacgatcggacgcacgttgccggacctcgtg
agctgggcgtggcacaaggatcgccgcggcggcaaggcgcggctggactacacgcagaac
gtgctgaacaaaacgctcgtggcgccctacagcgtgcgcccgcgcgtgggggcgccggtt
tccgtgccgctgcgctgggaagagctcgacgatccggaactcacgcccgaccactggacg
attcggacggtcctcgaccggatcgaggacgtcggggatccgttcgaaacgctgctgggt
gtggagcagcagctgccggagctgtga
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