Aeromonas rivuli: KYK33_08305
Help
Entry
KYK33_08305 CDS
T07884
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ariv
Aeromonas rivuli
Pathway
ariv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ariv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KYK33_08305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ariv03019
]
KYK33_08305
03009 Ribosome biogenesis [BR:
ariv03009
]
KYK33_08305
Enzymes [BR:
ariv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KYK33_08305
Messenger RNA biogenesis [BR:
ariv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KYK33_08305
Ribosome biogenesis [BR:
ariv03009
]
Prokaryotic type
rRNA helicases
KYK33_08305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
UBO75504
LinkDB
All DBs
Position
1760623..1762506
Genome browser
AA seq
627 aa
AA seq
DB search
MSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTA
AFALPLLSRLEAGNRNTQVLVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGSSYETQ
TRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMDQCP
AGRQVALFSATMPDQIRRVAQKHLKQPKEIKIVSKTSTAPTIRQRYWQVTGLHKLDAMTR
LLEVEPYEAVLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDI
LIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLR
AIEHATRQAIEPMKMPSTDDINQHRMTKFKERIRETMMGEELELYHNLVNELIQEDSVDP
LELAAALAKLVQGDQPLLLDDSIPEPQFNAGSGRDFERRDGGRDFGNRDGGDRGDRPARR
MPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRFIGNIDIADDFS
TVDLPKGMTADVLEVIKKARVCQRPLQITRYTEVPAGSNTAPRPQRSDRPFNKDRRPAGD
RPFNKGGERREGGFNKDRKFAGKRRDS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccgaacaactgcccctttttagtgagcttggactggccgcgcctgtattg
aaagcgctgcaggacgtgggctatgagcgcccgtcaccaatccaggccgcagcaatcccc
cacctgatggcgggacacgatctgctggggcaggcgcaaaccggtacagggaagaccgct
gcttttgctttgcctttgctctctcgtctggaagctggtaaccgcaacacccaggttttg
gtgctggcaccgactcgtgaactggcgctgcaggttgcagaagcgtgccaacgctatgcc
caccacatgcctgatttccacgtactgcccatctacggtggttcctcctacgaaacccag
acccgcgccctgcgtcgtggtgctcaggtggtcgtgggtaccccgggtcgcgtgatggat
cttattcgccgcaagaacctggacctctccggcctgaaagcactggtactggacgaagcc
gatgaaatgctgcgcatgggcttcatcgacgacgtggactggatcatggatcagtgcccg
gccggtcgccaggttgcgctgttctctgccaccatgccagatcagatccgtcgcgttgcc
cagaagcacctgaagcaacccaaagagatcaagatcgtctccaagacctccactgcaccg
accattcgtcagcgctactggcaggtaaccggtctgcacaagctggacgccatgacccgt
ctgctggaagtcgagccctatgaggctgttctggtgtttgttcgcaccaagaacgctgcc
gaagagctggctggcaagctggccgcccgtggccacgcctgtgaagccctgcacggtgac
attccgcagaaactgcgtgagcgtaccgtcgacaagctgcgtcaaggccagctggacatc
ctgatcgccaccgacgtcgtcgctcgtggtctggacgttgagcgtatcacccacgtggtg
aactacgacatcccttacgataccgaatcctacgtgcaccgtatcggccgtactggccgt
gccggtcgtaaaggcgaagccatcctgttcgtggctccgcgcgagcgccgtatgctgcgc
gccatcgagcacgcaacgcgtcaggccatcgagccgatgaagatgccgagcaccgatgac
atcaaccagcatcgcatgaccaagttcaaagagcgcatccgggaaaccatgatgggcgaa
gagcttgagctgtaccacaacctggtcaacgagctgatccaggaagactctgtcgatccg
ctggaactggctgccgcactggccaagctggtacagggcgaccaaccgctgctgctggat
gactccatccctgagccgcagttcaatgctggcagcggtcgtgacttcgagcgtcgtgac
ggtggccgtgatttcggcaaccgtgatggtggtgaccgtggcgatcgtcctgcccgtcgc
atgccgtccctggagccgcgtccgctcaaagacaacccggatgtggagatggagcgctac
cgtgtagacgtgggtgcccatcacggcgtcaagccgggtcaaatcgtcggtgccatcgcc
aacgaagcgaacatcgagagccgtttcatcggtaacatcgacatcgccgatgacttctcc
accgtcgacctgcccaagggcatgaccgccgatgtactggaagtgatcaagaaggcccgt
gtttgccagcgtccgctgcagatcactcgctataccgaagtgcctgccggcagcaacaca
gcgccacgcccgcagcgcagcgaccgccctttcaacaaggatcgtcgtccagccggtgac
cgcccgttcaacaagggtggagagcgccgtgaaggtggcttcaataaagatcgtaaattt
gctggtaagcgccgcgatagctaa
DBGET
integrated database retrieval system
