Arthrobacter sp. LS16: AFL94_03850
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Entry
AFL94_03850 CDS
T04078
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arl
Arthrobacter sp. LS16
Pathway
arl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFL94_03850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arl03400
]
AFL94_03850
Enzymes [BR:
arl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFL94_03850
DNA repair and recombination proteins [BR:
arl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AFL94_03850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALD63213
LinkDB
All DBs
Position
849257..852871
Genome browser
AA seq
1204 aa
AA seq
DB search
MSLVGLHDFLREESSFRRIRQGASQSFSTRSEELEIAAPQGMRPILGAHVSQGLSEGHER
AVTLIVTATGREAEDISASLAAYLPSKHVAEFPSWETLPHERLSPRSDTVGRRLEVLRRL
HDGDPDLKIIIAPIRAVLQPLVAGLGELRPVTLELDAEPGFDTVIRDLAAAAYARVDMVT
HRGEFAVRGGIIDVFPPTLEHPVRVDFFGDQIDTMRYFSIADQRSHEGAGPRSITATPCR
EMLITPKVMSRAANLKASFPAATEMLTKIAGGIAVEGMESLAPLLVDKMVPLLSLLPESS
IALVMEPERVRARAHDLNETNAEFLAAAWASASDGASAPLDLSTAEAGRKLETGDFASLA
QTVEHARQAKVSWWAVTSLGSDEELDLGAATIRVPAREPHGYQGDIEAMMEFIASRVADG
WRLVVATEGPGPAARLSELFGEYKIPAHRVEDLSAEPTAGLIEITQAAAGRGFVFEELKT
GLLTEADLLGRSSAYPNRKSRKLTVKRKRNAVDPLSLQTGDFIVHEQHGIGKFVELVSRK
VNGAGKDAKREYLVVEYASSKRGAPGDRLFVPMDQLHMITRYVGGEAPTLSKMGGSDWAS
TKSKARKAVKEIAGDLIKLYSARMASRGHAFASDTPWQGELEEAFAFIETPDQLTAINEV
KVDMEKEIPMDRLISGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLASQHYQTFTER
YSGFPVRVKTLSRFQTAKESKEILAGLKDGSVDIVIGTHRLLSKTVEFKNLGLVIIDEEQ
RFGVEHKEELKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGP
RSDKQISAAIKRELMRDGQVFFVHNRVSSIDRVAAELRELVPEARVEVAHGKMSESRLER
IIQDFWEKKFDVLVSTTIIETGLDISNANTLIVDRANNYGLSQLHQLRGRVGRGRERAYA
YFLWDAEKPLGEVALERLKAVAAHNELGSGYQLAMKDLELRGAGNLLGGEQSGHIAGVGF
DLYLRLVGEAVADYKGEGEEEATEMKIDLPVNAHLPHDYVPGERLRLEAYRNIASAETSE
ALAEVREELEDRYGKLPLPVENLLRVAALRIRARAVGLHDIQQVGNHIKLSPAKIEDLPA
SRQVRLERLYPGSANKPALNSIFIPKPKTSPVGGRDLADEAMLDWAENLVYAIFEPTPAA
AAKG
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgagcctagttggacttcatgatttcctgcgcgaggaatcgtcattccgccgtatccgc
caaggtgcatcacaaagcttttcgacccgcagcgaagagctggagatcgcggcgccgcag
ggcatgcgcccgattctcggagcccacgtcagccagggcctgtccgagggacacgagcgc
gcggtcacgctgatcgtcaccgcgaccggccgagaggccgaggacatctccgcgtcgctg
gccgcctacctgccgtccaagcacgttgccgaattcccttcctgggaaaccctgccccac
gaacggctctccccgcgcagcgacaccgtgggccgccgcctggaagtactgcgccggctg
catgacggggacccggacctgaagatcatcattgcgccgatccgcgccgtgctgcagccg
ctggtggcgggcctcggcgagctgcgcccggtcacccttgaactggatgccgagcccggc
ttcgacaccgtgatccgggacctggccgcggcggcctacgcccgggtggacatggtgacc
caccgcggcgaattcgcagtgcgcggcggcatcatcgatgtcttcccacccaccctggag
catccggtgcgcgtggacttcttcggcgaccagatcgacacgatgcgctacttctccatc
gcagaccagcgctcccacgagggggccgggccgagatcgatcaccgcgaccccgtgccgt
gaaatgctcatcacccccaaggtgatgagccgcgcggcgaacctcaaggccagcttcccg
gccgccactgaaatgctcaccaagatcgccggaggcatcgcggtggaaggcatggagtcc
ctggccccgctgctggtggacaagatggtgccgctgctctccctgctccccgaatcctcc
atcgcactggtcatggagcccgaacgcgtgcgcgcccgcgcccacgacctgaacgaaacc
aacgccgagttcctggccgcggcctgggcctcggcctcggacggagccagcgccccgctg
gatttgagcaccgccgaagccgggcgcaagctcgaaaccggcgatttcgcttcgctcgcc
cagaccgtcgagcacgcgcgccaggccaaggtctcctggtgggcggtcacctcgctgggc
tccgacgaggaactggacctgggcgctgcgaccatccgcgtcccggcccgcgaaccgcac
ggctaccagggcgatatcgaagcgatgatggaattcatcgcctcccgggtggcggacggc
tggcgcctggtggttgccaccgaaggccccggcccggccgcgcgcctgtccgagctgttc
ggcgaatacaagatcccggcccaccgcgtggaagacctctcggccgagcccaccgcaggg
ctgatcgaaatcacccaggccgccgccggtcgcgggttcgtgttcgaggagcttaaaacc
ggtttgctgactgaggcggacctgctgggacgctccagcgcctatccgaaccgcaagtcc
cgcaagctcacggtcaagcgcaagcgcaatgccgtggaccccttgagcctgcagaccggg
gacttcatcgtccacgagcagcacggcatcggcaagttcgtagaactggtgtcccgcaag
gtcaacggcgccggcaaggacgccaagcgcgaatacctggtggtcgaatacgcctcctcc
aagcgcggcgcgccaggggaccggctgttcgtcccgatggaccagctgcacatgatcacc
cgctacgtgggcggcgaggccccgacgctctccaagatgggcggctccgattgggccagc
accaagtccaaggcccgcaaggcggtcaaggagatcgccggagacctgatcaagctgtac
tctgcgcgcatggccagccgcggccacgcattcgccagcgacaccccgtggcagggcgaa
ctggaggaggccttcgcgttcatcgagacccccgaccagctcaccgccatcaacgaggtg
aaggtggacatggagaaggaaatcccgatggaccggctgatctccggcgacgtgggcttc
ggcaaaaccgaaatcgcggtgcgcgcagcgttcaaggcggtgcaggactccaagcaggtc
gccgtgctggtgcccaccacgctgctggcctcccagcactaccagacgttcaccgaacgc
tactcgggcttcccggtccgcgtgaagacgctctcccgcttccagaccgccaaggaatcc
aaggaaatcctggccgggctcaaggacggcagcgtggatatcgtgatcggcacccaccgg
ctgctgtcaaagaccgtggagttcaagaacctgggcctggtgatcatcgatgaggagcag
cgtttcggcgtggagcacaaggaagagctcaagaagatgcgcaccaacgtggacgtgctg
gccatgagcgccaccccgatcccgcgcaccttggagatgtccctgaccggcatccgcgaa
acctccaccctggccaccccgccggaggagcgccacccggtgctcacctatgtgggtccg
cgcagcgacaagcagatcagcgccgcgatcaagcgcgagctgatgcgcgacggccaggtg
ttcttcgtgcacaaccgcgtctcctccatcgaccgggtcgccgcggaactgcgcgagctg
gttcccgaggcgcgcgtcgaggtggcccacggcaagatgagcgagtcgcggcttgaacgg
atcatccaggacttctgggagaagaagttcgacgtgctggtctccaccaccatcatcgaa
accggcctggacatctccaacgccaatacgctgattgtcgaccgcgcgaacaactacggg
ctctcgcagctgcaccagctgcgcggacgcgtgggccgcggccgcgaacgcgcctacgcc
tactttctctgggacgcggagaagccgctgggcgaggtggccctggaacgcctgaaggcc
gtggcagcgcacaacgagctgggctcgggctaccagctggccatgaaggacctggaattg
cgcggtgcgggcaacctgctgggcggcgagcagtcaggccacattgccggggtgggcttc
gacctctacctgcgcctggtcggcgaggcagttgccgactacaagggcgagggcgaggaa
gaagccaccgagatgaagatcgacctgccggtcaacgcgcacctgccgcacgactacgtg
ccgggggagcgcctgcgcctggaggcctatcggaacatcgcctccgcggaaaccagcgag
gcgttggccgaggtccgcgaggagctggaagaccgctacggcaagctgccgctgccggtg
gagaacctgctgcgcgtcgcggccctgcgcatccgcgcccgcgcggtggggctgcacgac
atccagcaggtcggcaaccacatcaagctgtcgccggcgaagatcgaggacctgccggcc
agccgccaggtgcgcctggaacgcttgtacccggggtcggcgaacaagccggcgctgaac
tccatcttcattcccaagcccaagacctcgccggtcggcggccgggacctggcggacgaa
gccatgctggactgggcggagaacctggtctacgcgatcttcgagccgaccccggcagct
gcggccaagggctag
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