Arthrobacter sp. LS16: AFL94_15560
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Entry
AFL94_15560 CDS
T04078
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arl
Arthrobacter sp. LS16
Pathway
arl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AFL94_15560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arl03400
]
AFL94_15560
Enzymes [BR:
arl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AFL94_15560
DNA repair and recombination proteins [BR:
arl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AFL94_15560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALD65105
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Position
3357927..3360383
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AA seq
818 aa
AA seq
DB search
MARREQTVTVDGRTLKVSNLDKVLYPETGTTKGEVIDYLQRVAPALLPHAAWRPATRKRW
VDGVGTARNPGTVFFRKDLEDSAPSWIPRARLEHKTHSNTYPLANDAAVLAWFGQVAALE
IHVPQWRFNASLEQQHPDRLVLDLDPGPGAGLAQCAEVALLCREILEGMDLRPFPVTSGS
KGIHLYAGLDGTATSDQVNEVAKELAASLERKHPRLVVANMKKSLRENKVLVDWSQNNAA
KTTVCPYSLRGRSRPMVAAPRSWEEIESPGLEHLDFHEVLDRLSDGLDPLAALAPLAEQG
TDRLAVYRSKRDAKLTPEPVPQPPAARKTARAAATDSEKPVSFVIQEHHARRLHWDFRLE
HEGVLVSWAVPKGPPLQRGIQRLAVMTEDHPLDYGTFEGTIPKGQYGAGEVSIWDAGECT
IEKWRDGKEIIAVLSGREDGGLGGIPRRFVLIQARGMGDQDNWLLQLTKEQPSEDSTVPE
DIPDSSLLDEVPKPMLASSGVPEDIIEGDDWCFEMKWDGYRALAKVENGKVKLLSRNGND
MTEDFPELQELAVLAPEGAIVDGEIVALDGSARPSFSLLQQRISHRRKNRLRQAQAIKLN
FMLFDALQLPRSKGGKPENLIGEQYVDRRKYLEHAVSDGQYIKVPPAHTGPTLKAALKTS
LELGLEGVLAKECTGDYEPGRRSGSWVKIKHLLDQEALVIGWTKGQGNRASSIGSLLLAV
PAGDELEFIGRVGTGFSDLQLKEIRERLEKIARKTPPVKHIPAQFQRDAHWVTPKYVAEV
RYSELTKDGRLRHPVWRGWRDDKEPAEVRWEHPGSLMK
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcagggaacaaacggtcaccgttgatggccgcaccctgaaggtcagcaatctg
gataaggtgctatacccggaaaccgggacgaccaagggcgaagtcatcgactacctgcag
cgggtggccccggcgctgctgccgcatgcggcatggcgcccggcaaccagaaaacgctgg
gtggacggggtcggcacggcacggaacccgggaaccgtgttcttccgcaaggatctggag
gattcggccccaagctggattcccagagcccgtctggagcacaaaacccattccaataca
tatcccctggccaacgatgcggcagtactggcatggttcgggcaagtcgcagcgttggag
atccacgttccccaatggcgtttcaatgcgagcctggaacaacagcatcccgaccggctc
gtgctggatctggatcccggtcccggcgcaggcttggcccagtgcgccgaagtggctttg
ctatgccgcgaaatccttgagggcatggacctgcggccttttccggtgacctccggatcc
aaggggatccacctttacgccggtctggacggcacggcaacctccgaccaggtcaatgag
gtggccaaggaactcgccgcctcgctagaacgcaagcacccccggcttgtggtggcaaat
atgaagaaatccctgcgcgagaacaaggtgctggtggattggagccagaataacgccgcg
aaaaccacggtatgcccgtattcgctgcgcggacgttcgcgtcccatggtggccgcgcct
cgctcatgggaagaaatcgagtcccccggcctggagcacctggacttccacgaagtattg
gaccggctgtccgacggccttgatcccctggcggccctggcgcctctggcggaacaggga
acagaccggctcgcggtctaccgctccaagcgcgatgcaaagctcactcctgaacccgtg
ccacaaccgcccgcggcccggaaaaccgcgcgggctgcggctacggattcggaaaaaccc
gtgtctttcgtgatccaggagcaccatgcccgcaggctgcactgggatttcaggctggag
cacgagggggtcctggtctcctgggccgtcccgaaggggcccccgctccagagggggatc
cagcggctggctgtgatgaccgaagaccatcccttggactacggaaccttcgaaggaacg
attcccaagggccagtatggcgccggagaggtgtcgatctgggatgccggtgaatgcacc
attgagaaatggcgggatggcaaggagatcatcgcggtgctgtccggacgcgaagacgga
gggctcggcggcattccgcgccgcttcgtgctgatccaggctcgcggcatgggagaccag
gacaattggcttctgcagctcaccaaggagcagccttccgaggattcgacggttccggaa
gacatccctgattccagcctgctggacgaggttcccaagcccatgctggccagctccggg
gtgccggaggacatcatcgaaggcgacgactggtgcttcgaaatgaaatgggacgggtac
cgcgccctggccaaggtcgagaacgggaaggtgaaactgctcagccgcaacggcaacgac
atgaccgaagattttcccgagctacaggaacttgcggtgcttgcacccgagggcgcgatc
gtggacggcgaaatcgtcgccctggacggttcggcccgcccgagcttttccctgttgcag
cagcgcatctcgcatcggcgcaagaaccggctccggcaagcgcaggccattaagctcaac
ttcatgcttttcgatgccctgcagcttccccggagcaagggcggaaagcccgagaacctg
atcggcgaacaatatgtggatcgccgcaaataccttgaacacgcggtctccgacggacag
tacatcaaggtacctcctgctcataccggccccaccttgaaggcggcgttgaagacaagc
ctcgagctgggattggaaggggtgctggccaaggaatgcaccggcgactatgaaccgggc
cggcgcagcggcagctgggtgaagatcaagcacctgctggatcaggaggccctggttatc
ggatggaccaagggacagggaaaccgcgcgtcaagtatcggctcgctgctgctggccgtc
cccgccggcgatgagttggagttcatcggtcgggtcggcacggggttctcggatctgcag
ttgaaggagatccgcgaacgtctggagaagatcgcgcgcaagaccccaccggtcaagcac
atcccggcgcagttccagcgcgatgcgcactgggtgacccctaaatacgtggcggaggtc
cgttacagcgaactgacaaaggacgggcggctgcggcatccggtctggcgcggttggcga
gatgacaaggagcccgctgaggtgcgctgggaacaccccggcagcctcatgaagtaa
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