Arthrobacter sp. PAMC 25486: ART_3548
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Entry
ART_3548 CDS
T03487
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arm
Arthrobacter sp. PAMC 25486
Pathway
arm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ART_3548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arm03400
]
ART_3548
Enzymes [BR:
arm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ART_3548
DNA repair and recombination proteins [BR:
arm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ART_3548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIY03147
UniProt:
A0A0A1D120
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Position
complement(3686760..3689369)
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AA seq
869 aa
AA seq
DB search
MSGVRSRAGVAKNSPHGNNELCPPRRPNVSRSANQLVNVAGHRLKLSNLDKVFYPDSGTT
KADVLGYYAQVAHVLIPQAARRPATRKRWVDGVGTAEKPGKVFFRKDLENSAPDWVPRQI
LMHKDHVNTYPLVNEAAVLAWFGQVAALEIHVPQWRFGPDAKPARPDRLILDLDPGDGAG
LRECAEAAQLCRELLTAMGLEAYPVTSGSKGIHLYAALDGNHDSTDIAEVAHELARSLES
DHPDLIVSDMKKSLRNGKVLIDWSQNSEAKTTICPYSLRGRTRPTVAAPRLWDEIADPEL
RQLELHEVVARVKQGIDPISNLGLQQPVEDQPEAVDRLQKYRSMRDAGKTPEPVPLQAAK
DAASSEPTFVIQEHHASRLHWDFRLEHSGVLVSWAVPKGPPLEHTENRLAVMTEDHPLGY
GSFEGTIPQGEYGAGTVTIWDAGTCLLEKWREGKEVIALLHGRPDGGLGGVLRRYALINT
PGMGGAKNWLIHLMKDPPDTDPQTQKKAGEFDLSPGADSAVNRLVTPTRRAKIWSGEALD
LPAPMLATAATADGVDFSTSWSFEMKWDGMRAMAGVAGGTVRIASRSGRDVTQQYPELQE
LASLAADGSVLDGEIVALDKSGRPNFGLLQRRMKLSKPQDIARAMKTVPVQLILFDALQT
SAGSVVQPLQHKPYSQRRESLLTAVAQGRHIHLPPALTGTLEEALITSREFQLEGVVAKK
MESRYLPGKRSPDWLKIKDEKHQEVIVIGWRKGTGSRSKTLGSLLLAVHNESGLRYVGRV
GTGFSEHELQEAAAMLKTSERKTPPVKNIAATDRRDVVWTTPKLVGEVKYAELTADGKLR
HATWRGWRPDKTAKDVHWELGHAQGSGLP
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
gtgtccggggtgcgatcacgggcaggggtggcaaagaattcaccacacggtaacaatgaa
ctatgtccaccaaggaggcctaacgtgtcccgttcagcaaatcaactcgtgaatgttgcc
ggccaccgtctaaagctcagcaatttggacaaggtgttttaccctgattccggcaccacc
aaggctgatgtgctgggttactacgcccaggtggcccatgtcctgattccacaggcggcg
aggcgccccgctacacgaaaacgctgggtggacggagtgggcacggccgagaagcctgga
aaagtcttttttcgaaaagaccttgagaactcagcgccagactgggttcctcggcaaatc
ctcatgcacaaggaccatgtcaatacttatcccctcgtcaacgaggctgccgttttggca
tggtttggccaagtggccgcactggaaatccatgttccacagtggaggtttggtcccgac
gcgaagccagcaagacccgaccggctgattctggacttggatccaggggatggtgccggc
ctcagggagtgtgccgaggctgcgcagctgtgccgtgaactgctcactgccatgggcttg
gaggcctatccggtcacgagcgggtccaagggcatccatctctatgcggctctggacggc
aatcatgattccacagacattgcagaagtcgctcatgaacttgccaggtctttggaatcg
gaccatccggacctgatcgtctctgacatgaaaaagtcattgcggaacggcaaggttctg
attgactggagtcaaaatagcgaagccaagaccactatctgcccgtactcactccgcgga
aggactaggcccaccgttgccgccccacgattgtgggatgagattgcggaccccgaactg
cgccagctcgaactccacgaagtggtagcgagggtcaaacaaggaatcgaccccatcagt
aatttgggtttgcagcaaccagtcgaggatcagccagaggcagtggaccggcttcagaaa
taccggtccatgcgcgacgctggcaaaacccccgagccggtccccctccaagctgcgaaa
gacgccgcttcctccgaacccacgtttgtcattcaggaacatcacgcgtctcgactgcat
tgggatttccgactcgaacattccggcgtcctggtgtcctgggccgtccccaaaggcccg
cccctagaacatactgaaaaccggctcgccgtcatgacggaggaccaccccttaggctat
ggttccttcgaaggcaccattcctcaaggtgagtacggagcaggtactgtcaccatttgg
gacgccggaacatgcttactggagaaatggcgagagggaaaggaagtcattgcattgctc
cacggcaggcccgacggcggcttgggcggagtcctgcgccgctacgccctcatcaacacc
cccggcatgggaggggcaaagaattggctgatccacctcatgaaagacccgcccgatacc
gatcctcagacacagaaaaaagcgggtgagttcgacctctcacccggtgccgatagtgcg
gttaacaggctagtcacgccgacgcggcgggcgaaaatttggtcgggggaagccttggac
ctccccgctcccatgctggcgacggcggccacagcagacggcgtggatttctccacatca
tggtcattcgagatgaaatgggatggcatgcgtgccatggccggtgtggctggtgggaca
gtgcgtatcgccagcagaagtggccgagatgtcactcagcaatacccggaactccaggag
cttgcatctttggccgctgacgggtccgtgctcgacggcgaaattgtcgccttggacaag
tccggtcggcccaatttcggcttactacagagacgcatgaagctgagtaagcctcaggat
attgcgagggccatgaaaacggttcccgtccagctgattctttttgatgcgctgcaaaca
agtgctgggagcgtcgtgcaaccactgcagcacaagccgtattcacaacggcgcgagtca
ctccttacagcagttgcccaaggccgacacatccacctgccgcctgccctcacgggaact
cttgaagaagcgctgattacaagccgtgaattccagttagagggtgtggtcgccaagaaa
atggaaagccgctatctaccgggtaagcgcagcccggactggctaaagatcaaggacgaa
aaacatcaggaagtcatcgtcattggctggcgtaagggtaccggctcccgcagcaaaacc
ctcggctcactactacttgccgtgcataacgagagcgggctgcgctatgtgggaagggtg
ggcaccggtttctccgaacatgaactgcaggaggctgcagccatgctgaagaccagtgaa
cgcaagactccacctgtcaagaacatcgccgccacggacaggcgcgacgtcgtgtggaca
acacctaaactggtcggagaagtcaaatacgctgaactcaccgctgacggcaaactgcgt
cacgcaacctggcgtgggtggcgtcccgacaaaacagccaaggacgtgcattgggagcta
ggccatgcgcaaggctctggcctgccgtga
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