Amycolatopsis roodepoortensis: NQK81_31085
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Entry
NQK81_31085 CDS
T08507
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aroo
Amycolatopsis roodepoortensis
Pathway
aroo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aroo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NQK81_31085 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aroo03400
]
NQK81_31085 (mfd)
Enzymes [BR:
aroo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NQK81_31085 (mfd)
DNA repair and recombination proteins [BR:
aroo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NQK81_31085 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UUV36362
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All DBs
Position
6485680..6489234
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AA seq
1184 aa
AA seq
DB search
MSGLLHSILPDPALRGVVERAGAPVLELQGAIATRQLVVGALAADEGAGRPVLAVTATGR
EADELTASLKSFLGDGAVADFPSWETLPHERLSPRADTVGRRLEVLHRLETGADDLRVVV
ATVRSLIQPMAPGLGSLAPIDLVVGEEQSFEGLLERLVELAYTRVDMVEKRGEFAVRGGI
LDLFGPTAQHPVRVEFWGDEVSEIRAFAVSDQRSLPGEIQHVSAPPCRELLLTEPVRAKA
AELATTYEADAQLTEMLTKLSGGVPVEGMEALIPVLCEGELELLTDAMPQGTHVLLADPE
KIRARAADLVRTGQEFLEASWTTAAAGGQAPIDLGASAYRDLAGIAKHAQETKRPWWTLT
QLASDDPDVYRVSIEAAPNYRGEVERATTDLRAHTAAGGTAVLVVAGHGTAARAVEQLSA
GDVPASLAEGITGPLTPGVVTVTCGGLSDGFVSPERALVVLSESDLTGRGSGAGTSTKDF
STKMPSRRRNAVDPLALKAGDYVVHDQHGIGRFVEMVQRTVAGATREYLLLEYASSKRGH
PGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKAKKAVKEIAAELVQLYAARQ
AAPGHAFAQDTPWQGELEDAFPFTETNDQLAAIDEVKADMERGVPMDRVICGDVGYGKTE
IAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFTERMSSFPVKIKGLSRFTSKPESDAIL
EQLASGDVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSA
TPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGAYDDKQVGAAIRRELLRDGQVFYVH
NRVSSIEKAAKRIRELVPEARVVTAHGQMNEDKLEKIIQGFWENEYDVLVCTTIVETGLD
ISNANTLLVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQN
TELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVDAFRRHAGADMPE
EEELADVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAAPDQAGLDAVREELVDRYGQPPA
PVRRLLAVATFRHTCRAAGVTEVSAQGTSIRFAPLPLADSQMVRLKRLYPKALYKAVTNT
VSVPKPTEGPAGGRMGAPALRDEELLDWCAKLLTNLMKSPAPVA
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgtccggactccttcattccatccttcccgatccggccctgcgcggggtcgtcgagcgg
gccggtgccccggtgctcgagctccagggcgcgatcgccacccgccagctggtcgtgggc
gccctcgccgcggacgagggcgccggccgccccgtgctcgcggtgaccgcgaccggccgc
gaggccgacgaactgaccgcttcgctgaagtccttcctcggcgacggcgccgtcgccgac
ttcccgtcctgggagacgttgccgcacgagcggctgtcgccccgggcggacaccgtcggt
cggcggctggaggtgctccaccggctcgagacgggagccgacgacctgcgtgtcgtcgtc
gcgaccgtccgcagcctcatccagccgatggcgcccgggctcggttcgctcgcgcccatc
gacctggtggtcggcgaggagcagagtttcgaaggcctgctggagcggctggtcgagctc
gcgtacacgcgggtggacatggtcgagaaacgcggcgagttcgccgtgcgcggcggcatc
ctcgacctgttcgggccgacggcgcagcatccggtgcgggtcgagttctggggcgacgag
gtcagcgagatccgcgcgttcgcggtgtcggaccagcggtcgctgccgggggagatccag
catgtcagcgcgccgccgtgccgtgagctgctgctcaccgagccggtgcgcgcgaaggcc
gccgagctggcgacgacgtacgaggcggacgcccagctcaccgagatgctcaccaagctc
tccggcggtgtccccgtcgaggggatggaggcgctcatcccggtgctgtgcgagggcgag
ctggagctgctgaccgacgcgatgccccagggcacgcacgtgctgctggccgatccggag
aagatccgcgcccgcgcggccgacctggtccggaccgggcaggagttcctcgaagcgtcg
tggaccacggccgccgcgggtggtcaggcgccgatcgacctcggcgcgtccgcgtaccgg
gacctcgcggggatcgcgaagcacgctcaggagacgaagcgcccttggtggacgctgacg
cagctggccagtgacgatcccgacgtctaccgcgtctcgatcgaggccgcgccgaactac
cgcggcgaggtcgagcgcgcgacgacggatctgcgcgcgcacacggcagcgggcgggacg
gcggtgctcgtcgtcgccgggcacggcacggcggcccgcgccgtcgagcagctgtcggcg
ggggacgtgcccgcgtcgctcgcggaaggcatcaccggtccgctcacgccgggcgtcgtg
acggtgacgtgcggcggtctttcggacggcttcgtgtcgccggagcgggcgctggtcgtg
ctgtccgaatcggatctcaccggccggggctccggcgcggggacgtccacaaaggacttc
agcaccaagatgccgtcgcggcgccgcaacgccgtcgatccgctcgccctcaaggcgggc
gactacgtcgtccacgaccagcacggcatcggccggttcgtggagatggtgcagcgcacc
gtcgccggcgcgacccgcgagtacctgctgctggagtacgcctcctccaaacgcgggcat
ccgggggaccggctgttcgtcccgaccgaccagctcgacgaggtctcccgctacgtcggt
ggcgagctgccgacgctgaacaaactcggcggatcggactggaagaacaccaaggccaag
gcgaagaaggcggtcaaggagatcgccgccgaactcgtgcagctctacgccgcgcggcag
gccgcccccgggcacgcgttcgcgcaggacaccccgtggcagggcgaactcgaggacgcc
ttcccgttcaccgagaccaacgaccagctcgccgcgatcgacgaggtcaaggccgatatg
gaacgcggcgtcccgatggaccgcgtcatctgcggtgacgtcggctacggcaagaccgag
atcgcggtgcgcgcggcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtg
cccacgacgctgctcgctcagcagcacctcaacaccttcaccgaacggatgagttcgttc
ccggtgaagatcaaggggctttcgcggttcacctcgaagcccgagtcggacgcgatcctc
gaacagctcgcttccggcgatgtcgacatcgtgatcggcacccaccgcctgctgcagacc
gggatccggtacaaggacctcggcctggtgatcgtcgacgaggaacagcggttcggcgtc
gagcacaaggagcacatcaaggcgctgcggacgcacgtcgacgtgctgaccatgtcggcg
acgccgatcccgcggacgctggagatgtcgctcgccgggatccgtgagatgtccacgatc
ctgaccccgcccgaggacaggcacccgatcctgacctacgtcggcgcgtacgacgacaag
caggtcggcgccgcgatccggcgcgaactgctgcgcgacggccaggtcttctacgtacac
aacagggtttcctcgatcgagaaggccgcgaagcgcattcgcgaattggtgccggaggcg
cgcgtcgtcaccgcgcacgggcagatgaacgaggacaaactcgaaaagatcatccagggt
ttctgggagaacgagtacgacgtgctcgtctgcaccacgatcgtcgagaccgggctggac
atctcgaacgccaacaccctgctggtggaacgaggtgacctgctgggcctcgcgcagctg
caccagctgcgcggccgggtcgggcgcgggcgtgagcgcgggtacgcgtacttcctgtac
ccgccggaggccccgctcaccgagacggcgcacgaccggctggcgaccatcgcgcagaac
accgaactcggcgcgggcatggccgtcgcgatgaaggacctggagatccgcggcgcgggc
aacatcctgggcgcggagcagtccgggcacatcgcgggcgtcggtttcgatctgtacgtg
cggctcgtcggcgaagcggtcgacgcgttccgccgtcacgcgggcgcggacatgccggag
gaagaagaactcgccgacgtccgcgtcgaccttccggtggacgcgcacatcccccacgac
tacgtgccgggcgagcggttgcggctggaggcgtaccgcaagatcgcggccgctcccgac
caggccgggctcgatgccgtccgcgaggaactggtcgaccgctacggccagccgcccgcc
ccggtgcggaggctgctcgcggtcgccacgttccggcacacctgccgcgcggccggggtc
accgaggtctccgcacagggcacgtcgatccggttcgcgccgctgccgctggcggattcg
cagatggtgcggctgaagcgcttgtaccccaaggctctctacaaggcggtgacgaacacg
gtctccgtgccgaagccgacggagggcccggcgggcgggcggatgggcgcccccgcgttg
cgagatgaggaactgctggactggtgcgcgaagctcctgacgaatctgatgaagtcgccg
gcacccgtcgcgtga
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