Apteryx rowi (Okarito brown kiwi): 112969588
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Entry
112969588 CDS
T07573
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
arow
Apteryx rowi (Okarito brown kiwi)
Pathway
arow03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112969588 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arow03400
]
112969588 (LIG4)
Enzymes [BR:
arow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112969588 (LIG4)
DNA repair and recombination proteins [BR:
arow03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112969588 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
SKA1
Motif
Other DBs
NCBI-GeneID:
112969588
NCBI-ProteinID:
XP_025928811
Ensembl:
ENSARWG00000005334
LinkDB
All DBs
Position
Unknown
AA seq
913 aa
AA seq
DB search
MASTPASQPSPKKTVASQVPFADLCCTLERMQTCKSRPEKNKYFKDFLDSWRRFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKEIMLAKLYIELLNLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRCPKQGRLTIEQVNELLDAIANNNAAKNKGLLKKSLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPTVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNHQIFYIETKLDGERMQMHKDGDVYKYFSRNG
YDYTQQFGASPREGSLTPFIHKVFKSNVQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EESDLQTCYCVFDVLMVNDQKLGHETLTKRYEILSGIFTPVTGRIHAVHKTSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPSIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
CNILCGTEKPEVYIEPFNSVIVQIKAAEIVNSDMYKTDCTLRFPRIERIREDKEWYECMT
SDMLEHLRSKAEGKLASKHLHIDDDDEPQEKKKKTVPKVKKVIGIAEQFKAPDLSNINKI
SNVFEDVEFCVMTGTGRYLKSELESRIAECGGSVVQNPGPDTYCVIVGTENVRVKNIIAS
NKYDVVKAEWLLQCFQTKMLVPWQPAFMIHMCPDTKEHFAREYDCYGDSYTADTDVAQLK
EVFSRMKDNNKMLSLDVIAELEERYSWNSCQLSIFRGNTIYVDCYAVVNEPRTKIHGTRL
SIRALELRFYGAKVVPHLEEGVSHVVIGEDHSRVKEMKALRRTFGKKFKIVSELWVTESV
EEGVPKNENQYLI
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcttctacacctgcttcacagccttctcctaaaaaaacagtagcctctcaggtgcct
tttgcagatctatgctgtactctggagcgaatgcagacatgtaaatctcggccagaaaaa
aacaaatatttcaaggattttctggattcctggaggaggttccatgatgctctccatcaa
aaggagaaagatgttacagattctttttaccctgcaatgcgacttattcttccacagttg
gaaagagaaaggatggcatatggaattaaagaaattatgcttgcaaagctgtatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
gctggctcacgtggagatgctggagactttgcaatgattgcatactttgtattaaaacct
aggtgcccaaaacaaggcagactgacaatagaacaagtcaacgaactcttagatgcaata
gctaataataatgctgccaaaaacaagggtctattaaagaaaagtctccttcagttaatt
actcagagctcagcacttgaacaaaaatggcttatccggatgattataaaggatctaaaa
cttggtgttagtcaacaaactatattttccatttttcatcctgatgctgctgaattacac
aatgtcacaactgatttggaaaaagtctgtagacaactacatgatcccactgtctcactt
agtgatgtttctatcatgttattttctgcctttaaaccaatgcttgctgctattgctgac
gtccagcaaattgagaaacaaatgaatcatcagatattctacatagaaactaaactggat
ggtgagcgtatgcagatgcacaaagatggagatgtatataagtatttttcccgaaatggg
tatgactatactcagcagtttggtgcttcaccccgtgaaggttcattaactccgtttatt
cataaagtatttaaaagcaatgtgcaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaacattcatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggaatctgatctgcagacttgctactgtgtgtttgatgtattaatggttaacgatcaa
aagttgggccatgaaacactaaccaaaagatacgagatcttaagtggcatatttacccca
gtaacaggtagaatacatgctgtacataaaacaagtgccagaactagaaaagaagtaatt
gatgctttaaatgaagcaatagataatagagaggaaggaattatggtgaaagatcccatg
tccacttacaagcctgacaaacgtggggaaggctggttaaaaatcaagccggaatatgtc
agtgggttgatggatgaactagaccttttgattgttggcggttactggggaaagggctcc
cgtggtggaatgatgtctcattttttgtgtgctattgcggaaactccacctccaaatgaa
aaacctagtattttccactctatttgtcgtgttggctctggttatactatgaaggaattg
tatgatctgggtttgaaactggctaaacactggaagccctaccataggaaggaccctcca
tgcaacattttgtgtggaactgaaaaacctgaagtgtacattgaaccttttaactctgta
atagttcagattaaggcagctgagattgttaacagtgatatgtataaaactgactgtact
ttgagattcccccgaattgagagaataagagaggacaaggaatggtatgaatgcatgact
tcagacatgttagaacatctcagaagcaaagcagaagggaagctggcctctaaacacctt
catatagatgatgatgatgagccacaagagaaaaaaaagaaaactgtaccaaaggtgaag
aaggtaattggaatagcagagcagtttaaagcccctgatctttctaatataaacaagatt
tcaaatgtattcgaagatgttgaattttgtgttatgacaggaacaggaagatatttgaag
tctgaattagaaagcagaatagctgagtgtggtggaagtgtggtacagaaccctggacca
gacacttactgtgtcattgtaggaactgagaatgtcagagtgaaaaacatcattgcttcc
aacaagtatgatgtggtgaaggcagagtggctcctccagtgttttcaaaccaaaatgctt
gtaccttggcagcctgcctttatgattcacatgtgtcctgacacaaaagaacattttgct
cgtgaatatgattgttacggagacagctatacagcagatacagatgttgcacaactaaag
gaagtgttctcaagaatgaaagataataataagatgttgtctttggacgtgattgctgaa
ttagaagaacgttattcatggaacagctgccaactcagtatattcagaggaaacactatt
tatgtggactgttatgctgttgttaatgaacccagaacaaaaatccatggaacaagacta
tcaattagagcgttggagctccgattttatggtgcaaaagtagtccctcacctagaagag
ggtgtgtcgcatgtcgttataggagaagatcactcccgggtaaaagagatgaaagcactg
aggagaacatttggtaaaaaatttaaaattgtatctgagctgtgggtaactgagtcagta
gaggaaggagtcccaaagaatgaaaatcaatatttaatttaa
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