Arthrobacter sp. QXT-31: BWQ92_08275
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Entry
BWQ92_08275 CDS
T05056
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arq
Arthrobacter sp. QXT-31
Pathway
arq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BWQ92_08275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arq03400
]
BWQ92_08275
Enzymes [BR:
arq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BWQ92_08275
DNA repair and recombination proteins [BR:
arq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BWQ92_08275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
DUF4031
Motif
Other DBs
NCBI-ProteinID:
APX01705
UniProt:
A0A1P8M110
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All DBs
Position
1827167..1829746
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AA seq
859 aa
AA seq
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MAGGKERVRVGGRELTLTNLDKIMYPATGTTKADVIAYYAAVAPVLIPAARNRPVTRKRW
VHGVGTEDNPGEVFFQKNLDESAPGWVPRAAITHKTNTNYYPLLNDPATLTWLAQIASLE
IHVPQWTVDSHGRSLPPDRLVLDLDPGEGAGLPECVEVAKLARTILQDVGLDPVPVTSGS
KGIHLYAVLKGTQSSDEVSAFARELARALEADHPDIAVSDMKKALRTGKVLVDWSQNNAA
KTTIVPYSLRGRLHPTVAAPRTWRELGSPSLKHLDYEEVMRRVAAGKDPFAPISAVTGHP
SPAHPSPVHTRPAHTAADGPRGGGHADPRLNKYRSLRDQGKTPEPFTAEEHHAAKANGAS
AQAGKEIFVIQEHHASRLHYDFRLEHEGVLVSWALPKGVPESADKNHLAVQTEDHPMDYA
DFEGDIPKGEYGAGSVSIWDKGVYELEKWVNGKEVIATLTGQEGGGLGGTRKFALIHTGK
GQGEESQWLIHLMDRVTGVRKKQVGTKGPAGPARAAAHTRSAPAQAAPAAAPRGVSALQE
DPAPMLASAGTLADLHGSEWLFELKWDGIRALVVADGDRIRLLSRNGNDMSASYPEFTDR
SCWPPQDFIADGEIIAVGPSGRPDFGLLQGRMKLTRPGDVKRARATIPVRMMLFDLLADG
GDDLRKLPLRKRRERLADFFEPGECPVELSETLDDRVEHILESARELGLEGVMAKRADSR
YVSGQRTHTWIKLKIEQTQEVVVGGWRPGKGDRSNTVGYLLVGIPEGKTLRYVGRVGSGF
SMRELEELRKRLEGLAQKTRPFDDVPSADAADARWVKPDLVGEVTFGEWTGSGKLRHPVW
RGWRLDKEPAEVVVESQGL
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggtaaggaacgcgtaagggtcggtggccgcgaactgaccctgaccaacctc
gacaagataatgtatcccgccaccggcaccaccaaggcggacgtcatcgcctactacgct
gcggtggccccggttctcattcccgctgccagaaaccgcccggtgacccgcaagcgatgg
gtgcacggagtaggaactgaggacaacccgggcgaggtgttcttccagaagaacctggac
gaatcggcgcccggctgggtgccccgtgccgccatcacgcacaagaccaacaccaactac
tatccgctgcttaatgatccggccaccctcacctggctggcgcagatcgcctcgctggag
atccacgtgccgcagtggacggtggactcccacggacgttctttgccgcccgaccggctg
gtcctggacctcgatcccggggaaggcgcgggcctgcccgaatgcgtggaggtggccaaa
ctggcgcggaccatcctgcaggacgtggggcttgaccccgttccggtcaccagcggcagc
aagggcatccacctgtatgcagtcctcaaggggacgcagagctcggatgaggtttccgcc
ttcgcgcgggaactggcccgcgcactggaggccgaccatcccgacattgccgtcagcgac
atgaagaaggcccttcggacggggaaggtcctggtcgactggagccagaacaacgcagcg
aagaccacgatcgttccgtactcgctccgcgggcggctgcaccccacggtggcggcgccg
cggacctggcgggagctgggttcgccgtcgctgaagcacctggactacgaggaggtcatg
cgccgggtggcggccggcaaggaccccttcgcgccgatcagtgcggtcaccggccatccc
agcccagcccaccccagccccgtccacaccaggcccgcccacactgctgccgacggtccg
cgcgggggaggccatgccgatccccggctgaacaagtaccggtccctgcgcgaccaagga
aaaacgcccgagccgttcaccgccgaagaacaccacgcggcgaaagccaacggcgcctcc
gcgcaggcgggcaaggagatcttcgtaatccaggagcatcacgccagccggctgcattac
gacttccggctggagcacgagggggttctggtctcctgggccctgcccaagggggtgccc
gagtcagcggacaagaaccacttggccgtacagaccgaagaccaccccatggactacgcc
gactttgagggtgacatccccaagggcgaatacggggcgggcagcgtgagcatctgggac
aagggcgtctacgagctcgaaaagtgggtgaacggaaaggaagtcatagccacactgacc
ggccaggagggcggcgggctgggcggcaccaggaagttcgccctgatccatacggggaag
gggcagggcgaggaatcccagtggctcatccatctgatggacagggtcaccggcgtacgg
aaaaagcaggtcggcaccaagggaccggcgggcccggcccgcgctgccgcgcacacccgc
tccgcgcccgctcaggcggctccggccgcggccccaagaggtgtcagcgcccttcaggag
gacccggcccccatgctcgcctcggcaggcaccctggcggatctgcacggcagcgagtgg
ctcttcgaactcaagtgggacgggatccgcgcgctcgtggtggcggacggcgaccggatc
aggctcctgagccgcaatggcaacgacatgtcggccagctatccggaattcacggaccgg
agctgctggccgccgcaggacttcatcgctgacggtgagatcatcgccgtcgggccgtcc
ggccggccggacttcgggctcctgcagggaagaatgaagctgaccaggccgggcgacgtg
aagcgggcgcgtgccaccatcccggtgcggatgatgctcttcgacctcctggccgacggc
ggcgatgaccttcgcaagctgcccctgaggaagcggcgggagcggctggctgacttcttc
gaacccggcgagtgcccggtggaactgtcggagaccctggacgaccgggtggaacacatc
ctggaaagcgcccgggaactgggcttggaaggcgtgatggccaagcgggcggacagccgc
tatgtgagcgggcagcggacccacacatggatcaagctcaagatcgaacagacacaggaa
gtggtggtgggcggctggcggcccggcaagggcgaccggtccaacaccgtgggatacctc
cttgtgggcattccggagggcaagactctgcggtatgtgggccgtgtgggaagcggcttc
agcatgcgtgaactggaggagttgcggaaaaggctggaggggctggcccaaaagacgcgg
cccttcgatgacgtcccctcggcagacgcggcagacgcccgctgggtcaagcccgacctg
gtgggcgaggtgactttcggtgagtggaccgggagcggcaagctccgccaccctgtatgg
cgcggctggcggctggacaaggaaccggcggaggttgtggtggagtcccagggcctatga
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