Arthrobacter sp. FB24: Arth_1245
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Entry
Arth_1245 CDS
T00421
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
art
Arthrobacter sp. FB24
Pathway
art03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
art00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Arth_1245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
art03400
]
Arth_1245
Enzymes [BR:
art01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Arth_1245
DNA repair and recombination proteins [BR:
art03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Arth_1245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ABK02639
UniProt:
A0JUB9
LinkDB
All DBs
Position
1372715..1376383
Genome browser
AA seq
1222 aa
AA seq
DB search
MSLTGPSLTGLRRALAGDTTFARVQAEASRSFGTRSEDYQISAPAGLRAALLAEMSDGLA
ALHSGDGASPAASNDDAGAPLVLAVTATGREAEDLTAALRAFLPAGSVAEFPSWETLPHE
RLSPRSDTVGRRLSVLRRLAHPETASGGPLRVVVAPVRAVVQPIVAGLGDLKPVTLKVGQ
DAPFSDVVRSLSDAAYARVDMVTHRGEFAVRGGILDVFPPTEDHPIRVEFFGDEVDQMRW
FAVADQRSLSSPGLHHPTELHAPPCREILITPSVMSRAATLKTELPAAADMLEKIAGGIT
VEGMESLAPVLVDAMVPFVEQLPGGSISVVIEPEKVRTRAHDLAATNEEFLEAAWSTASD
GGTAPLDLSSAASAALHSASFRSLTETRTSALGQEVSWWSITSLATDEELTPDINVLNLH
AREPRGYQGDVAEMMEFIGSHVRDQWRIVVATEGPGPAQRLAELFHDADIPCARVDSLDH
EPQPGIIEVTTAAVGRGFVLDGLKLGLLTEADLLGRTSAGSTKDMRRMPSKRRNAVDPLQ
LVAGDHVVHEQHGIGRFVELIQRKVAGGGEGVREYLVLEYAPSKRGAPGDRLFVPTDQLD
QVTRYVGGDTPALSKMGGSDWASTKSKARKAVKEIAGELIRLYSARMASKGFAFGPDTPW
QRELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDG
KQVAVLVPTTLLAQQHYETFTERFSGFPLRVKPLSRFQASKEAKETAEGVKNGSVDVVIG
THRLLSKDFAFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTG
IRETSTLATPPEERHPVLTYVGPYTDKQTSAAIRRELMREGQVFFVHNRVSSIERTAAKI
RELVPEARVEVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGAD
KYGLSQLHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQLAMKD
LEIRGAGNLLGGEQSGHIQGVGFDLYIRLVGEAVADFRGEAEEKAAEMKIELPVNAHLPH
DYVPGERLRLEAYRKLASALTNEAIDEVLAELVDRYGEPPLPAQNLIAVARFRVGAREAG
LSDVALQGNFIKFSPAQLPESKTMRLARMYPGSQSKPALDAVLIPKPKTARIGGRDLQDA
EILEWANGVIRNIFSDAPLTVG
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaccggcccgtcacttacaggccttcgccgcgcgctcgccggagacacaacg
tttgcccgcgtgcaggctgaagcgtcccggagttttggaacccgcagcgaggattatcag
atcagtgcgccggccgggctgcgcgcggcgctgctggcggagatgtccgacggcctcgcg
gcgctgcactccggtgacggcgcgtccccggcggcaagcaacgacgacgccggggcaccc
ctggtgctggccgtcaccgccaccggccgggaagcggaggacctcaccgcggcgctgcgg
gcgttcctgccggccggttccgtggccgaattccccagctgggagacactcccgcacgaa
cggttgtccccgcgttcagacactgttggccgccgcctgtccgtgctgcgccggctggcc
cacccggagacagcctccggagggccgctccgcgtagtggtggcgcctgtccgagccgtg
gttcagccgatcgtcgcaggcctgggcgacctcaagcccgtcacgctgaaggtgggccag
gacgccccgtttagcgacgtggtccgcagcctctccgacgccgcctacgcccgtgtggac
atggtgacccaccgcggcgagttcgcggtccgcggcggcatcctggacgtcttcccgccc
acggaggaccacccgatccgggtggagtttttcggcgacgaggtggaccagatgcgctgg
ttcgccgtggcggaccagcgttccctctcatctcccggcctgcaccaccccactgaactg
catgcgccgccgtgccgcgagatcctgatcaccccctccgtgatgtccagggccgccacg
ctcaaaaccgagctgcccgcggctgccgacatgctcgaaaagatcgccgggggcatcacg
gtggaaggcatggagtccctggcacccgtgctggtggacgccatggttcccttcgtggag
caactgcctggcgggtccatctccgtggtgatcgagccggaaaaggtccgcacgcgcgcc
cacgacctcgccgccacgaacgaggaattcctcgaggctgcgtggtccactgcctctgac
ggcggcacggcgcctcttgacctgagctccgccgcctcggccgccctccactccgccagc
ttccggtccctcacggaaacgcgcacttcggccctcggccaggaggtctcgtggtggtcc
atcacctcgctggccaccgacgaagagttgacgccggacatcaacgtgctcaacctgcac
gcccgggagccccgcggctaccagggggacgtagcggaaatgatggagttcatcggttcg
cacgtccgggaccagtggcgcattgtggtggccacggagggcccaggcccggcccagcga
ctggccgagttgttccatgacgcagacatcccctgcgcccgggtcgactcgctcgaccac
gagccccagcccggcatcatcgaggtgaccactgccgccgtcggacgcggttttgtcctg
gacgggctgaaactgggcctgctgacggaagcggacctgctgggacgcacgtccgcggga
tccacgaaggacatgcggcgcatgccctccaagcggcggaacgccgtggacccgctgcaa
ctggtggcgggcgaccatgtagtccacgaacagcacggcatcggccgctttgtggagctg
atccagcggaaggtggcgggaggcggagagggcgtccgcgaatacctcgtcctggaatac
gctccgtccaagcgcggcgcccccggcgacaggctctttgtgcccacggaccagctggac
caggtcacccgctacgtgggcggcgacactcccgcgctcagcaagatgggcggctcggac
tgggccagcaccaagtccaaggcacgcaaggcagtcaaggagatcgccggcgaactcatc
cggctgtattcggcccggatggcctccaagggcttcgccttcggccccgacaccccgtgg
cagcgcgagctggaagaggcgttcccctatgtggaaaccccggaccagctgaccaccatc
aacgaggtcaaggcggacatggaacgcgagatccccatggaccggctggtgtccggcgac
gtgggctacggcaagaccgaaatcgccgtccgcgccgccttcaaggccgtccaggacggc
aagcaggtggccgtgctggtgcccaccaccctgctggcccagcagcactatgaaaccttc
acggaacggttctccggcttcccgctgcgggtgaagccgctgtcccgcttccaggcatcg
aaggaggccaaggagaccgcggaaggcgtcaagaacggttccgttgacgtggtgatcggc
acgcaccggctcctgtccaaggactttgcgttcaaggacctgggcctggtgatcgtggat
gaggagcagcgcttcggtgtcgaacacaaggaagcgctcaagaagatgcgcaccaacgtg
gacgtcctggccatgagcgccacaccgatcccgcgcaccctggagatgtcgctgaccggc
atccgtgagacgtccaccctggccaccccgccggaagagcgccacccggtgctgacctat
gtgggcccgtacacggacaagcagacttccgcggccatccggcgcgaactgatgcgcgag
ggccaggtgttcttcgtccacaaccgcgtgtcctccatcgaacggaccgccgccaagatc
cgtgagctggtgccggaagcccgggtggaggtggcccacggccagatgtccgagagccgc
ctcgagcagatcatcgtggacttctgggagaagcgcttcgacgtgctggtgtgcaccacc
atcatcgaaacgggcctggacatctccaacgccaacaccctgatcgtggacggggcggac
aagtacggactgtcccagctgcaccagctgcgcggacgcgtgggccgcggccgcgaacgc
gcctacgcgtacttcctgtacccctccgagaagccgctgggcgaggtggcgctggaacgg
ctcaaagccgtggcagcgcataacgagctcggcgccggcatgcagctggcgatgaaggac
ctcgaaatccgcggcgcgggcaacctgctgggcggcgaacagtccggccacatccagggc
gtgggcttcgacctctacatccgcctggtgggcgaagccgtcgcggacttccgcggcgag
gccgaggagaaggccgcggaaatgaagatcgagctccccgtcaacgcccaccttccgcac
gactacgtgccgggtgaacggctgcgcctcgaggcctacagaaagctggcgtccgcactc
acgaacgaagccatcgacgaggtcctggccgaactggtggaccgctacggcgaaccgccg
ctgcccgcccagaacctgatcgccgtcgcacgcttccgggtaggggcccgcgaagccggg
ctgtccgacgtcgccctgcagggaaacttcatcaagttctccccggcacagctgcccgaa
tcgaagaccatgcggcttgcccggatgtacccgggctcgcagtccaagcctgccctggac
gcggtgctcatccccaagcccaagacggcccggatcggcggccgcgacctgcaggacgcc
gagatcctggagtgggccaacggcgtcatccggaacatcttctccgacgccccgctcaca
gtcggttag
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integrated database retrieval system
