Arthrobacter sp. Hiyo4: AHiyo4_04140
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Entry
AHiyo4_04140 CDS
T08405
Name
(GenBank) putative DNA ligase-like protein Mb0963
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arty
Arthrobacter sp. Hiyo4
Brite
KEGG Orthology (KO) [BR:
arty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AHiyo4_04140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arty03400
]
AHiyo4_04140
Enzymes [BR:
arty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AHiyo4_04140
DNA repair and recombination proteins [BR:
arty03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AHiyo4_04140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAS06992
LinkDB
All DBs
Position
complement(307984..310506)
Genome browser
AA seq
840 aa
AA seq
DB search
MAGPKERVRVAGRELTLTNLDKIIYPETGTTKADVLAYYAAVAHVLIPAAANRPATRKRW
VNGVGTAGHPGEVFFQKNLEDSAPGWLPRAAITHKDRTIYYPMVNDPATLTWFGQINSLE
IHVPQWQVDSHGKQLNPDRLVLDLDPGDGAGLEECAEVARLARAILQDVGLEPVPVTSGS
KGIHLYAGLDGTQTSDQISDFAHELARALEADHPDLAVSDMKKTLRRGKVLVDWSQNSAA
KTTIVPYSLRGRLTPTVAAPRTWQEIGSPELQHLDYTAVLRRVKAGKDPFAAVGSGAGHP
GDAGNPSAKTDDGGAHARLERYRSMRDPDATPEPFSGASGNGDTFVIQEHHASRLHFDFR
LEHEGVLVSWALPKGVPESGKKNHLAVQTEDHPLDYATFEGTIPKGQYGAGEVTIWDHGT
YELEKWINGREVIATLTGAEGGGLGVTRKFALIHTGRGQGRDSEGQWLIHLMDKDHHTFH
PRRAAVEDEPAEGAADATAADAFGAEPAADVFPAATAPSPLRAEDFGPMMATSGTAADLH
GSDWQFELKWDGVRALLVADEKKIRIFSRNGIDVTTTYPELTDRTCWPSGPFVADGEIIA
VGPSGRPDFGLLQGRMKLTRPADVAKARAAIPVRLMLFDLLSDGGEDLRQLPFAKRRKRL
EEFHHPSECPVELSAVLDEKIEHILESAQELGLEGVMAKRTDSRYVSGQRTRTWIKIKLE
QTQEVVVGGWRPGKGGRQSSVGSLLVGIPDGNKLRYVGRVGSGFNMRELHELRQKVDDLA
RKTSPFDDVPHEDASDAHWVEPRLVGEVTFGAWTGSGKLRHPVWRGWRPDKNADEVVPEG
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
gtggccgggcctaaggagcgtgtcagggtcgcggggagggaactgacgctcaccaacctg
gacaaaatcatctacccggagaccggcaccaccaaggccgatgtcctggcctactacgcc
gccgtggcccatgttctgattcccgccgcggccaaccggcccgccacccgcaagcgatgg
gtcaacggggtgggcaccgccgggcatcccggcgaggtgtttttccagaagaacctggag
gattcagcgccgggctggctcccccgcgccgccatcacacacaaggaccggaccatctac
tacccgatggtgaacgatcccgccacgctcacctggttcggccagatcaattcgctggaa
atccatgtcccccagtggcaggtggactcccacggcaagcagctgaacccggaccgcctg
gtcctggacctcgatcccggcgacggtgccggactggaggaatgcgccgaggttgccagg
ctggcacgcgccatcctgcaggacgtaggcctggagccggtgccggtgaccagcggcagc
aagggcatccacctctacgcgggcctggacggaacgcagacctccgaccagatctcggac
tttgcgcacgaactggcccgcgcgctggaagcggaccacccggatctcgccgtgagcgac
atgaaaaagacgctgcgcagaggcaaggtgctggtggactggagccagaacagcgccgca
aagaccaccatcgtgccgtactccctgcgcggccgcctcacgcccacggtggccgcccct
cggacctggcaggagatcgggtcccccgaactgcagcacctcgactacacagctgtgctg
cgccgggtcaaggcgggcaaggacccgttcgccgccgtcggcagcggtgccgggcaccct
ggggacgccgggaaccccagtgccaagacggacgacggcggcgcgcacgcccggctggag
cggtaccggtcgatgcgggaccctgatgcgacgcctgagccgttctccggcgcctccgga
aacggggatacgttcgtgatccaggagcaccacgcgagcaggctccacttcgacttccgg
ctggagcacgagggtgtgctggtgtcgtgggccctgccgaagggcgtcccggaatccggc
aaaaagaaccacctggcggtccagaccgaggaccaccctttggattacgccacgtttgag
ggcaccattcccaaaggccagtacggcgccggcgaggtgaccatctgggaccacggcacg
tatgaactggagaaatggatcaacggtcgggaggtcatcgccacgctgaccggtgccgag
ggcggcggcctgggcgtcaccaggaagttcgccctcatccacaccggccgcgggcagggc
agggactccgaaggacaatggctcatccacctgatggacaaggaccaccacacgttccat
ccgcggcgggctgcggtggaggacgaaccagcggagggcgcggcggatgctacggcggcg
gacgctttcggcgctgagcctgccgcggacgttttcccggccgcgaccgcgccttcccca
ctgcgtgctgaagatttcggtcccatgatggcaacgtccgggaccgcagccgacctgcac
ggcagcgactggcagttcgaactgaagtgggacggcgtgcgtgccctgctggtcgcggac
gagaagaagatccggatcttcagccgcaacggcatcgacgtcaccacaacctaccccgaa
ctgacggaccggacctgctggccgtcgggcccgttcgtcgccgacggcgagattatcgcc
gtcgggccttccggcagacccgatttcgggctgctccagggacgcatgaaactgacccgg
cccgccgacgtcgcgaaggcccgcgcagcaatccctgtccggctgatgctttttgacctg
ctgtccgacggcggcgaggaccttcgccagctgcccttcgcgaagcggcggaagcggctg
gaggagttccatcacccgtcggagtgtcccgtggagctgtccgccgtcctggacgagaaa
atcgaacacatcctggagagcgcgcaggagctcggcctcgagggtgtgatggccaagcgg
accgacagccgctacgtcagcgggcagcgaacccggacgtggatcaagatcaagctggaa
cagacccaggaagtggtggtgggcggctggcggccgggcaagggcgggcggcagagttcg
gtgggttcgctgctggtgggcatccctgacggtaacaagctgcggtatgtgggccgggtg
ggcagcgggttcaacatgcgcgaactgcacgaactccggcagaaagtggacgatctggcg
cgcaagacgtcaccgttcgacgacgttccccacgaagatgcctcggacgcccactgggtg
gagccccggctggtcggtgaggtgaccttcggggcatggaccggcagcggcaagctcagg
catccggtgtggcggggctggcggccggacaaaaacgccgacgaagtggtgccggagggt
tag
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