Arachnia rubra: J5A65_11965
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Entry
J5A65_11965 CDS
T07339
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arub
Arachnia rubra
Pathway
arub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5A65_11965 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arub03400
]
J5A65_11965 (mfd)
Enzymes [BR:
arub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5A65_11965 (mfd)
DNA repair and recombination proteins [BR:
arub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J5A65_11965 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QUC07634
LinkDB
All DBs
Position
complement(2640963..2644445)
Genome browser
AA seq
1160 aa
AA seq
DB search
MRFPGLLPALEADPAVRATLHDSQVAGAEARDITCATSFFATATALLASESGRTTLLVTS
TFREAEAMAAEIAGLLGEDAVAYYPAWETLPHERLSPRADTVGKRLAVLRRLASDAPPQV
VVAPVRALLQPQVKDLAAMRPVTVEASQECDLTSLLKSLVDAAYNRVDLVERRGEFAVRG
GIVDVFPPTAEQPVRIDFFGDEVTEIRPFSVADQRSTGEQLRKVTAEPCRELLLTGAVRQ
RAKALQREHPQLSDMLSRLAEGHAVEGMEALIPVLVDGLELITDVLPQRSLVLLAAPELV
RARAVELVATSEEFLSASWAAAASGGTSPIDLGASSYRALGEVREHTMGLGHKWWSLTPF
TADEAPDANLDADSVHSRQLGITPTEDFRGDVDAAVAHIQGRLRDGWRVLIGVEGQGLAS
RMTELLAEHQITAGLSELDSEPETGTAHVVVGSFRRGWRAGPAKLELLTAAELSGQQAAE
RGQRKLPSRRRNTIQPLELKAGDPIVHEVHGVGRFVELVQRTVQGAVRDYLVIEYAASKR
GQPGDRLFVPMDQLDQLTRYVGSETPALDKMGGADWAKRKSRARKAVKEISAELIKLYAA
RQATKGHAFGPDTPWQRELEDAFSFVETPDQLSAIQEVKADMERVVPMDRLICGDVGFGK
TEIAVRAAFKAIQDGKQVAVLVPTTLLVSQHHQTFASRFAGFPVHMAQLSRFQGDAESRK
VLEGLANGRIDLVIGTHRLLAKEVVFKDLGLVIIDEEQRFGVEHKERLKELRVNVDVLSM
SATPIPRTLEIAITGIREMSVIATPPEERHPVLTLVGPYDKGQVRAAIRRELAREGQVFF
VHNRVDSIDKVAAELRELVPEARVATAHGQMGESRLEQVMLDFWERRADVLVCTTIVEAG
LNIQTANTLIIDRADVLGLSQLHQLRGRVGRSSERGYAYFLYPADKPLTQTAHERLTTMA
SHTDLGAGMSIAMRDLELRGAGNLLGGEQSGHIADVGFDMYLRLVGEAVAQYRGEDTTPE
PALRIELPVDAHLPDEYVPSERLRLEMYKQIAEIRSPEDVEAVRSELADRYGELPPPVEQ
LLGVAVLRNRARELGVVDIVAQGKNVRVEPVTLPESRQLRLQRLYPGSVYKAAASQLLVP
KPDGDTVAWAMSLLDRVISP
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
gtgagatttcccggacttcttcccgccctcgaagccgacccagccgtccgggccacgctg
cacgactcccaggtggcgggcgcggaggcgcgtgacatcacctgcgccacctcattcttc
gccaccgcgaccgccctgctggcatccgagtccgggcgcacgacgctgctggtcacctcc
accttccgggaggccgaggccatggctgccgagatcgccggcctgctcggtgaggacgca
gtcgcctactacccggcgtgggaaactctgccccacgagcgcctttcaccccgggccgac
accgtcggcaagcgcctggccgtgttgcggcggcttgcctctgacgcgccgccgcaggtg
gtggtcgcgcccgtgcgcgccctgcttcagccgcaggtcaaggacctggccgcaatgcga
cccgtcaccgtcgaggctagccaggaatgcgacctgaccagtctgctgaagtcgctggtg
gatgcggcgtacaaccgcgtcgacctggtggagcggcgaggcgagttcgcggtgcgcggc
gggatcgtggacgtcttcccacctaccgcggaacagccggtccgcatcgacttcttcggc
gacgaggtgaccgagatccggccgttctccgtcgccgaccagcgctccaccggtgagcag
ctgaggaaggtcacggccgagccctgccgggagctgctgctcaccggtgcggtccggcag
cgggccaaagcccttcagcgggagcatcctcagctctcggatatgctctcccgtctcgcc
gaggggcatgcggtcgaggggatggaggccctgatccccgtcctggtggacggcctggag
ctgatcaccgacgtgcttccgcagcggtccctggtgctgctggcggccccggagctggtg
cgggcccgcgccgtcgaactggtcgcgaccagtgaggagttcctgagtgccagctgggcg
gctgcggccagcggcggcacctcgcccatcgacctgggagcctcctcctaccgggcgctc
ggtgaggtccgtgaacacaccatggggctcggccacaaatggtggagcctcaccccgttc
acagccgacgaggcccccgacgccaatctcgacgccgactctgtgcattcccgccagctc
ggtatcacccccaccgaggacttccgtggcgacgtggacgctgccgttgctcatatccag
ggccggctccgtgacggctggcgggtgctgatcggcgtcgaggggcagggcctggcttcg
cgcatgaccgagctgttggctgagcatcagatcaccgcgggcctctccgaacttgacagc
gaaccagagaccgggactgcgcacgtggtcgttggctccttccgccgtggctggcgcgct
gggcccgcgaagctggagctgcttaccgccgcggaactgtcaggacagcaggccgcggag
cgtggccagcgcaaactgccgtcccgccgccgcaacaccatccagccgctggagctcaag
gccggcgacccgatcgtccacgaggtccacggggtcggcaggttcgtggagctggtgcag
cgcaccgtccagggcgccgtccgcgactacctggtgatcgagtacgcggctagcaaacgc
ggccagcccggtgaccggttgttcgtgccgatggaccagcttgaccagctgacccgctac
gtcggatccgagacccccgcgctggacaagatgggtggcgcggactgggcgaaacgcaag
tcgcgcgcccggaaggccgtcaaggagatctccgcggagctcatcaagctctacgccgcc
cggcaggccaccaagggacacgccttcgggccggacaccccctggcagcgggagctggag
gacgccttcagcttcgtcgagacccccgaccagctgtctgcgatccaggaggtcaaggcc
gacatggagagggtggtccccatggaccgcctgatctgcggcgacgtcgggttcggcaag
acagagatcgccgtccgggcggcgttcaaggccatccaggatggcaagcaggtggcggtg
ctggtgccgacgaccctgctggtcagccagcaccatcagaccttcgcgtcacggttcgcg
ggttttcccgtccacatggcgcagctgagccggttccagggcgacgccgaatcgaggaag
gtcctcgaagggttggcgaacggcaggatcgacctggtgatcggcacccaccggctgctg
gccaaggaggtcgtgttcaaggatctcggcctggtgatcatcgacgaggagcagcggttc
ggcgtcgagcacaaggagcggctgaaggagctgcgggtcaacgtcgatgtgctgtcgatg
tcggccacccccatcccgcgcaccctggagatcgcgattacagggatccgggagatgagc
gtgatcgccaccccgccggaggaacgccacccggtgctgaccctcgtcggcccctacgac
aaggggcaggtgcgggccgcgatccgccgcgagctggcgcgggagggccaggtgttcttc
gtccacaaccgcgtcgactccatcgacaaggtggccgccgagctgcgggagctggtgccg
gaggcccgggtcgccaccgcccacgggcagatgggggagtcgaggctggagcaggtcatg
ctcgacttctgggagcggcgggccgacgtgctggtgtgcaccaccatcgtcgaggcgggc
ctgaacatccagaccgcgaacaccctcatcatcgaccgcgccgacgtgctagggctctcc
cagctgcaccagctgcggggccgggtgggacgctcctccgagcggggctacgcctacttc
ctgtatcccgcggacaagcccctcacccagaccgcccatgagcgcctgacgacgatggcc
tcccacaccgacctcggcgcgggaatgtcgatcgcgatgcgcgacctggagctgcgcggt
gctgggaaccttctcggcggggagcagtccgggcacatcgccgacgttggcttcgacatg
tacctgcgcctggtgggggaggccgtcgcccagtaccggggcgaggacaccacgccggag
ccggcgctgcgcatcgagctgcccgtcgatgcccatctgcccgacgagtacgtgccgtcg
gagcggctgcggctggagatgtacaagcagatcgcggagatccgctcgcctgaggacgtc
gaggcggtgcgctctgagctggcggaccgctacggtgagctgccgccgcccgtcgagcag
ctcctgggggtcgcggtgctgcgcaaccgcgcccgcgaactcggggtggtggatatcgtt
gcgcagggaaagaacgtccgggtcgagccggtgacgctgcccgagtcacgccaactgcgg
ctgcagcgtctgtatccggggtcggtatacaaggcggcggcgtcgcagctgctggtaccc
aaacccgacggcgatacggttgcctgggcgatgtccctgctggaccgggtgatcagtccg
tag
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